Results 81 to 90 of about 24,976 (271)

A Comprehensive Evaluation of Taxonomic Classifiers in Marine Vertebrate eDNA Studies

Molecular Ecology Resources, EarlyView.
ABSTRACT Environmental DNA (eDNA) metabarcoding is a widely used tool for surveying marine vertebrate biodiversity. To this end, many computational tools have been released and a plethora of bioinformatic approaches are used for eDNA‐based community composition analysis.
Philipp E. Bayer, Adam Bennett, Georgia Nester, Shannon Corrigan, Eric J. Raes, Madalyn Cooper, Marcelle E. Ayad, Philip McVey, Anya Kardailsky, Jessica Pearce, Matthew W. Fraser, Priscila Goncalves, Stephen Burnell, Sebastian Rauschert   +13 more
wiley   +1 more source

Incipient speciation in the rice blast fungus [PDF]

, 2015
Emerging fungal diseases of plants represent a growing issue accompanying global environmental changes, and there is tremendous interest in identifying the factors controlling their appearance and spread.
Adreit, Henri, Cros-Arteil, Sandrine, Fournier, Elisabeth, Gladieux, Pierre, Loos, Renaud, Milazzo, Joëlle, Ravel, Sébastien, Tharreau, Didier, Thierry, Maud   +8 more
core  

Aboriginal Australian mitochondrial genome variation - An increased understanding of population antiquity and diversity [PDF]

, 2017
Aboriginal Australians represent one of the oldest continuous cultures outside Africa, with evidence indicating that their ancestors arrived in the ancient landmass of Sahul (present-day New Guinea and Australia) ∼55 thousand years ago.
A Bergstrom, A Chandrasekar, A Thorne, AJ Drummond, AJ Redd, AJ Redd, AT Duggan, BP McEvoy, C Clarkson, CD Woodroffe, CSM Turney, D Darriba, D Reich, DA Merriwether, DM Behar, E Heyer, F Delfin, G Hudjashov, HJ Bandelt, I Pugach, J Friedlaender, JC Presser, JF O’Connell, JF O’Connell, JM Bowler, JS Friedlaender, K Huoponen, K Tamura, KA Tabbada, KN Ballantyne, M Derenko, M Ingman, M Ingman, M Kayser, M Kayser, M Kayser, M Rasmussen, M Stoneking, M van Oven, M van Oven, MJ Pierson, N Nagle, P Brown, P Forster, P Soares, PA Soares, Q Fu, R Fregel, RG Roberts, RL Cann, RM Andrews, RP Norris, S Anderson, S Kumar, S van Holst Pellekaan, S van Holst Pellekaan, SM Gomes, SM van Holst Pellekaan, T Kivisild, TH Heupink, TH Huxley, V Macaulay   +61 more
core   +6 more sources

Leveraging Synteny to Generate Reference Genomes for Conservation: Assembling the Genomes of Hector's and Māui Dolphins

Molecular Ecology Resources, EarlyView.
ABSTRACT Escalating concern regarding the impacts of reduced genetic diversity on the conservation of endangered species has spurred efforts to obtain chromosome‐level genomes through consortia such as the Vertebrate Genomes Project. However, assembling reference genomes for many threatened species remains challenging due to difficulties obtaining ...
S. Alvarez‐Costes, C. S. Baker, R. Constantine, E. L. Carroll, J. Guhlin, L. Dutoit, S. Ferreira, D. Heimeier, N. J. Gemmell, J. Gillum, R. M. Hamner, W. Rayment, W. Roe, B. Te Aikā, L. Urban, A. Alexander   +15 more
wiley   +1 more source

First complete mitochondrial genome of the South American annual fish Austrolebias charrua (Cyprinodontiformes: Rivulidae): peculiar features among cyprinodontiforms mitogenomes [PDF]

, 2015
Selected nucleotide substitution models after the third codon positions were removed from the codon alignments.
Graciela García, Hugo Naya, Natalia Rego, Verónica Gutiérrez   +3 more
core   +12 more sources

Validating a Target‐Enrichment Design for Capturing Uniparental Haplotypes in Ancient Domesticated Animals

Molecular Ecology Resources, EarlyView.
ABSTRACT In the last three decades, DNA sequencing of ancient animal osteological assemblages has become an important tool complementing standard archaeozoological approaches to reconstruct the history of animal domestication. However, osteological assemblages of key archaeological contexts are not always available or do not necessarily preserve enough
Kuldeep D. More, Ophélie Lebrasseur, Jaime Lira Garrido, Andaine Seguin‐Orlando, Emmanuel Discamps, Oscar Estrada, Laure Tonasso‐Calvière, Loreleï Chauvey, Gaëtan Tressières, Stéphanie Schiavinato, Morgane Gibert, Horacio Padula, Horacio Chiavazza, Pablo M. Fernández, Nicolás M. Guardia, Caroline Borges, Stéphane Bertani, Juan Contreras‐Mancilla, Diana Allccarima‐Crisóstomo, Miguel Fhon, Eric Barrey, Léa Charliquart, Emilie Robbe, Thibault de Noblet, Rinat Zhumatayev, Samat Shakenov, Emmanuelle Vila, Rémi Berthon, Marjan Mashkour, Roya Khazaeli, Ahmad Nikgoftar, Ali A. Vahdati, Pavel Kosintsev, Jean‐Luc Houle, Jamsranjav Bayarsaikhan, Jaroslaw Wilczynski, Magdalena Moskal‐del Hoyo, Marek Nowak, William Taylor, Adrian Bălășescu, Roxana Dobrescu, Norbert Benecke, Benjamin Arbuckle, Sharon Steadman, Gregory McMahon, Petra Rajić Šikanjić, Marcel Buric, Tajana Trbojević Vukičević, Nadir Alvarez, Jean‐Christophe Castel, Myriam Boudadi‐Maligne, Bastiaan Star, Julian Robert Post‐Melbye, Christian Løchsen Rødsrud, David W. G. Stanton, Sophy Charlton, Victoria E. Mullin, Kevin G. Daly, Nohemi Sala Burgos, Adrian Pablos, Love Dalen, Daniel G. Bradley, Laurent Frantz, Greger Larson, Ludovic Orlando   +64 more
wiley   +1 more source

Comparative analyses of three complete Primula mitogenomes with insights into mitogenome size variation in Ericales

BMC Genomics, 2022
AbstractBackgroundAlthough knowledge of the sizes, contents, and forms of plant mitochondrial genomes (mitogenomes) is increasing, little is known about the mechanisms underlying their structural diversity. Evolutionary information on the mitogenomes ofPrimula, an important ornamental taxon, is more limited than the information on their nuclear and ...
Lei Wei, Tong-Jian Liu, Gang Hao, Xue-Jun Ge, Hai-Fei Yan   +4 more
openaire   +3 more sources

Novel molecular approach to define pest species status and tritrophic interactions from historical Bemisia specimens [PDF]

, 2017
Museum specimens represent valuable genomic resources for understanding host-endosymbiont/parasitoid evolutionary relationships, resolving species complexes and nomenclatural problems.
A Dinsdale, A Polaszek, A Polaszek, A Polaszek, AK Dubey, B-L Qiu, B-L Qiu, C Simon, D Gotzek, DC Oliveira, DCSG Oliveira, E Chiel, F Vavre, G Gueguen, GH Corbett, H Li, H Li, HL Ji, J Xu, JC Brownlie, K Katoh, K Lagesen, KC Rowe, KDE Everett, KM Oliver, LA Mound, LM Boykin, LM Boykin, LM Russell, M Bernt, M Dowton, M Mao, MJTN Timmermans, MM Tin, MS Hoddle, MZ Ahmed, NW Schaad, O Bahar, P Wang, PA Rollat-Farnier, PJ Barro De, Q Rao, Q Su, Q Su, RG Shatters Jr., S Abd-Rabou, S Ghosh, S Ueda, SE Masta, SN Song, SS Liu, SS Liu, VN Rao, WT Tay, WT Tay, WT Tay, XL Bing, Y Watanabe   +57 more
core   +1 more source

Two novel cricetine mitogenomes: Insight into the mitogenomic characteristics and phylogeny in Cricetinae (Rodentia: Cricetidae)

Genomics, 2019
Both Cricetus cricetus and Phodopus sungorus mitochondrial genomes (mitogenomes) were sequenced and elaborated for the first time in the present study. Their mitogenomes contained 37 genes and showed typical characteristics of the vertebrate mitogenome.
Li Ding, Quan Zhou, Yuanhai Sun, N. Yu. Feоktistova, Jicheng Liao   +4 more
openalex   +4 more sources

Conserved Sequence Identification Within Large Genomic Datasets Using ‘Unikseq2’: Application in Environmental DNA Assay Development

Molecular Ecology Resources, EarlyView.
ABSTRACT Identification of conserved genomic sequences and their utilisation as anchor points for clade detection and/or characterisation is a mainstay in ecological studies. For environmental DNA (eDNA) assays, effective processing of large genomic datasets is crucial for reliable species detection in biodiversity monitoring.
Mark Louie D. Lopez, René L. Warren, Michael J. Allison, Lauren Coombe, Jacob J. Imbery, Inanc Birol, Caren C. Helbing   +6 more
wiley   +1 more source