Results 11 to 20 of about 44,381 (219)

MentaLiST – A fast MLST caller for large MLST schemes [PDF]

Microbial Genomics, 2017
MLST (multi-locus sequence typing) is a classic technique for genotyping bacteria, widely applied for pathogen outbreak surveillance. Traditionally, MLST is based on identifying sequence types from a small number of housekeeping genes.
Will Hsiao, Leonid Chindelevitch, Dan Fornika, Pedro Feijao, Hua-Ting Yao, Cedric Chauve, Jennifer Gardy   +6 more
core   +5 more sources

Multilocus sequence typing (MLST) for characterization of Enterobacter cloacae. [PDF]

PLoS ONE, 2013
Enterobacter cloacae is an important emerging pathogen, which sometime causes respiratory infection, surgical site infection, urinary infection, sepsis, and outbreaks at neonatal units.
Masahiro Shimojima, Teruo Kirikae, Kayoko Hayakawa, Tohru Miyoshi-Akiyama, Norio Ohmagari, Shimojima Masahiro, Hayakawa Kayoko, Ohmagari Norio, Kirikae Teruo, Miyoshi-Akiyama Tohru   +9 more
core   +5 more sources

Core Genome MLST for Source Attribution of Campylobacter coli [PDF]

Frontiers in Microbiology, 2021
Campylobacter species are among the leading foodborne bacterial agents of human diarrheal illness. The majority of campylobacteriosis has been attributed to Campylobacter jejuni (85% or more), followed by Campylobacter coli (5–10%). The distribution of C. jejuni and C.
Harrison, Lucas, Mukherjee, Sampa, Hsu, Chih-Hao, Young, Shenia, Strain, Errol, Zhang, Qijing, Tillman, Glenn E., Morales, Cesar, Haro, Jovita, Zhao, Shaohua   +9 more
openaire   +4 more sources

MLST genotyping and phylogenetics of AD-hybrids

Medical Mycology, 2022
Abstract S8.5 Genotyping of Cryptococcus neoformans and C. gattii, September 23, 2022, 3:00 PM - 4:30 PM   Objectives In a previous study a set of new molecular-type specific primers were designed to apply the standard ISHAM consensus
Massimo Cogliati, Min Chen, Jianping Xu, Megan Hitchcock, June Kwon Chung, Dong-Hoon Yang, Volker Rickerts, Marie Desnos Ollivier, Joao Inacio Silva, Wieland Meyer, Magdalena Florek, Urszula Nawrot, Patricia Escandon, Andrés Puime, Frederic Roger, Sébastien Bertout   +15 more
  +5 more sources

Identification and validation of two peptide markers for the recognition of Clostridioides difficile MLST-1 and MLST-11 by MALDI-MS [PDF]

Clinical Microbiology and Infection, 2019
Clostridioides difficile infection (CDI) has become the main cause of nosocomial infective diarrhoea. To survey and control the spread of different C. difficile strains, there is a need for suitable rapid tests. The aim of this study was to identify peptide/protein markers for the rapid recognition of C.
Corver, J., Sen, J., Hornung, B.V.H., Mertens, B.J., Berssenbrugge, E.K.L., Harmanus, C., Sanders, I.M.J.G., Kumar, N., Lawley, T.D., Kuijper, E.J., Hensbergen, P.J., Nicolardi, S.   +11 more
openaire   +3 more sources

Characterisation of South African field Ehrlichia ruminantium using multilocus sequence typing

Onderstepoort Journal of Veterinary Research, 2023
Heartwater, one of the major tick-borne diseases of some domestic and wild ruminants in Africa, is caused by Ehrlichia ruminantium. The genetic diversity of E.
Zinathi Dlamkile, Luis Neves, Darshana Morar-Leather, Christopher Brandt, Alri Pretorius, Helena Steyn, Junita Liebenberg   +6 more
doaj   +1 more source

A Single Multilocus Sequence Typing (MLST) scheme for seven pathogenic Leptospira Species [PDF]

, 2012
This study was funded by the Wellcome Trust. BGS and DMA were funded by Wellcome Trust grant 089472. SJP receives support from the NIHR Cambridge Biomedical Research CentreBackground: The available Leptospira multilocus sequence typing (MLST) scheme ...
Taylor, K, Cuicai Zhang (276536), Hoffmaster, Alex R., Chantratita, Narisara, Spratt, BG, Aanensen, David M., Amornchai, P., Lee D Smythe, Hoffmaster, AR, Galloway, R., Cuicai Zhang, Rudy A Hartskeerl, Alex R Hoffmaster, Feil, Edward J., Jiang, X, Taylor, K., Rudy A. Hartskeerl (94597), Day, N.P., Feil, E.J., Narisara Chantratita, Jiang, X., Holden, Matthew, Sharon J. Peacock (35782), Brian G. Spratt (10001), David M Aanensen, Chantratita, N., Thaipadungpanit, J, Boonsilp, S., Hartskeerl, Rudy A., Bailey, Mark S., Sharon J Peacock, Xiugao Jiang (276537), Amornchai, Premjit, Aanensen, D.M., Renee Galloway (276539), Narisara Chantratita (33898), Taylor, Kyle, Premjit Amornchai, Koizumi, N., Bailey, MS, Mark S. Bailey (101757), Edward J Feil, Amornchai, P, Boonsilp, Siriphan, Nobuo Koizumi, Smythe, Lee D., Siriphan Boonsilp (276535), Lee D. Smythe (35773), Smythe, LD, Bailey, M.S., Kyle Taylor (377049), Zhang, C, Jiang, Xiugao, Janjira Thaipadungpanit (35771), Day, Nicholas P., Siriphan Boonsilp, Galloway, R, Chantratita, N, Premjit Amornchai (247975), Edward J. Feil (35780), Peacock, Sharon J., Thaipadungpanit, J., Peacock, SJ, Wuthiekanun, V, Hartskeerl, RA, Vanaporn Wuthiekanun (35772), Craig, S., Galloway, Renee, Zhang, C., Holden, M.T.G., Craig, Scott, Scott Craig, Brian G Spratt, Hoffmaster, A.R., Holden, MTG, Feil, EJ, Matthew T G Holden, Boonsilp, S, Peacock, S.J., Matthew T. G. Holden (130258), Koizumi, N, Spratt, B.G., Renee Galloway, Wuthiekanun, V., Nicholas P. Day (160727), Koizumi, Nobuo, Nobuo Koizumi (276538), Aanensen, DM, Day, NP, David M. Aanensen (10000), Wuthiekanun, Vanaporn, Hartskeerl, R.A., Kyle Taylor, Spratt, Brian G., Janjira Thaipadungpanit, Vanaporn Wuthiekanun, Smythe, L.D., Nicholas P Day, Xiugao Jiang, Alex R. Hoffmaster (276540), Thaipadungpanit, Janjira, Mark S Bailey, Zhang, Cuicai, Scott Craig (276541), Craig, S, Amornchai Premjit, Feil Edward J., Aanensen David M., Boonsilp Siriphan, Koizumi Nobuo, Craig Scott, Taylor Kyle, Spratt Brian G., Peacock Sharon J., Day Nicholas P., Thaipadungpanit Janjira, Galloway Renee, Smythe Lee D., Jiang Xiugao, Hartskeerl Rudy A., Hoffmaster Alex R., Wuthiekanun Vanaporn, Bailey Mark S., Zhang Cuicai, Holden Matthew T. G., Chantratita Narisara, Holden, Matthew; id_orcid   +126 more
core   +1 more source

MLST output

, 2021
This folder contains the MLST output generated for all datasets used in the ...
Natasha Pavlovikj (9269684)
core   +1 more source

Multilocus sequence typing of a global collection of pasteurella multocida isolates from cattle and other host species demonstrates niche association [PDF]

, 2011
Background- Pasteurella multocida causes disease in many host species throughout the world. In bovids, it contributes to bovine respiratory disease (BRD) and causes haemorrhagic septicaemia (HS).
Hodgson, J.C., Hodgson, J. Christopher, Lainson, F. Alex, J Christopher Hodgson, Lainson, F.A., Emily J Hotchkiss, Zadoks, R.N., F Alex Lainson, Hotchkiss, E.J., Zadoks, Ruth N., Hotchkiss, Emily J., Ruth N Zadoks, Lainson, A.F.   +12 more
core   +1 more source

The heterogeneity, distribution and environmental associations of Borrelia burgdorferi sensu lato, the agent of Lyme borreliosis, in Scotland

Frontiers in Public Health, 2014
Lyme borreliosis is an emerging infectious humandisease caused by the Borrelia burgdorferi sensu lato complex of bacteria with reported cases increasing in many areas of Europe and North America.
Marianne eJames, Lucy eGilbert, Alan eBowman, Ken eForbes   +3 more
doaj   +1 more source