Results 91 to 100 of about 54,154 (232)

Short read sequence typing (SRST): multi-locus sequence types from short reads

BMC Genomics, 2012
Background Multi-locus sequence typing (MLST) has become the gold standard for population analyses of bacterial pathogens. This method focuses on the sequences of a small number of loci (usually seven) to divide the population and is simple, robust and ...
Inouye Michael, Conway Thomas C, Zobel Justin, Holt Kathryn E   +3 more
doaj   +1 more source

An MLSA-based online scheme for the rapid identification of Stenotrophomonas isolates [PDF]

, 2011
An online scheme to assign Stenotrophomonas isolates to genomic groups was developed using the multilocus sequence analysis (MLSA), which is based on the DNA sequencing of selected fragments of the housekeeping genes ATP synthase alpha subunit (atpA ...
Barbosa, Heloiza Ramos, De Vos, Paul, Moreira-Filho, Carlos Alberto, Ramos, Patrícia Locosque, Ribeiro Vasconcelos, Ana Tereza, Swings, Jean, Thompson, Cristiane Carneiro, Thompson, Fabiano Lopes, Van Trappen, Stefanie   +8 more
core   +3 more sources

Systematics of Marmosa Subgenus Micoureus With Emphasis in ‘rapposa’ Group (Didelphidae, Marmosini): Geographic Variation and Revalidation of M. budini

Zoologica Scripta, EarlyView.
ABSTRACT Micoureus is the most species‐rich subgenus within the genus Marmosa. Conflicting arrangements regarding the number of species comprising this subgenus have been proposed and the validity of M. budini has been debated. Here, we used an approach integrating genetic and morphological data were conducted to reanalyze the ‘rapposa’ group ...
Maria Clara Santos Ribeiro, Aldo Caccavo, Joyce Rodrigues do Prado, Cibele Rodrigues Bonvicino   +3 more
wiley   +1 more source

Using BOX-PCR to exclude a clonal outbreak of melioidosis

BMC Infectious Diseases, 2007
Background Although melioidosis in endemic regions is usually caused by a diverse range of Burkholderia pseudomallei strains, clonal outbreaks from contaminated potable water have been described. Furthermore B. pseudomallei is classified as a CDC Group B
Ward Linda, Mayo Mark, Gal Daniel, Currie Bart J, Godoy Daniel, Spratt Brian G, LiPuma John J   +6 more
doaj   +1 more source

Limited asymptomatic carriage of Pneumocystis jiroveci in human immunodeficiency virus-infected patients [PDF]

, 2003
Forty-seven bronchoalveolar lavage fluid samples from 16 human immunodeficiency virus (HIV)-infected patients were used to test the latency model of Pneumocystis infection in the human host.
Ambrose, HE, Denis, CM, Lindley, AR, Miller, RF, Wakefield, AE   +4 more
core  

Interplay Between River Formation and Historical Climatic Changes Drove Diversification of the Thamnomanes caesius and T. schistogynus (Passeriformes, Thamnophilidae) Species Complex Across Amazonian and Atlantic Forests

Zoologica Scripta, EarlyView.
ABSTRACT The Amazon and Atlantic forests harbour immense biodiversity shaped by complex evolutionary history with diverse processes leading to species build‐up. We investigated the Cinereous Antshrike species complex (Thamnomanes caesius and T. schistogynus) to disentangle the relative contributions of riverine barriers and historical climatic ...
Henrique Batalha‐Filho, Tibério César Tortola Burlamaqui, Martin Irestedt, Per G. P. Ericson, Jon Fjeldså, Cristina Yumi Miyaki, Alexandre Aleixo   +6 more
wiley   +1 more source

Burkholderia pseudomallei in Unchlorinated Domestic Bore Water, Tropical Northern Australia

Emerging Infectious Diseases, 2011
To determine whether unchlorinated bore water in northern Australia contained Burkholderia pseudomallei organisms, we sampled 55 bores; 18 (33%) were culture positive. Multilocus sequence typing identified 15 sequence types. The B.
Mark Mayo, Mirjam Kaestli, Glenda Harrington, Allen C. Cheng, Linda Ward, Danuta Karp, Peter Jolly, Daniel Godoy, Brian G. Spratt, Bart J. Currie   +9 more
doaj   +1 more source

Exploring the Potential of Serpulid External Tube Morphology for Rapid Grouping Assessment in Ecological Research: A Case Study From Southern New Zealand

New Zealand Journal of Zoology, Volume 53, Issue 2, June 2026.
In ecological field studies where species‐level identification is challenging, practical approaches based on external morphological traits may provide a useful basis for rapid assessments. Here, New Zealand serpulid worms were initially grouped based on their external calcareous tube morphology and subsequently sequenced using the 18S rRNA gene to ...
Tom Massué, Sara Ferreira, Jessica Moffitt, Neil J. Gemmell, Miles D. Lamare   +4 more
wiley   +1 more source

Multilocus sequence typing of from broilers

Veterinary Microbiology, 2009
isolates from a national Swedish monitoring in broilers were characterized by multilocus sequencing typing (MLST) in order to study the genetic diversity of this bacterial population. Isolates were initially characterized by pulsed-field gel electrophoresis (PFGE). One hundred were chosen for MLST genotyping.
Griekspoor, Petra, Engvall, Eva Olsson, Olsen, Björn, Waldenström, Jonas   +3 more
openaire   +3 more sources

Phylogeny and Disease Association of Shiga Toxin–producing Escherichia coli O91

Emerging Infectious Diseases, 2009
The diversity and relatedness of 100 Shiga toxin–producing Escherichia coli O91 isolates from different patients were examined by multilocus sequence typing. We identified 10 specific sequence types (ST) and 4 distinct clonal groups.
Alexander Mellmann, Angelika Fruth, Alexander W. Friedrich, Lothar H. Wieler, Dag Harmsen, Dirk Werber, Barbara Middendorf, Martina Bielaszewska, Helge Karch   +8 more
doaj   +1 more source