Results 11 to 20 of about 479,201 (254)

Understanding the population structure of Moraxella catarrhalis using core genome multilocus sequence typing (cgMLST) and a life identification number (LIN) code classification system [PDF]

Yassine I, Jolley KA, Bray JE, Jansen van Rensburg MJ, Patel F, Sheppard AE, Zar HJ, Allen V, Tow LA, Maiden MC, Nicol MP, Brueggemann AB.   +11 more
europepmc   +2 more sources

Retraction Note: A modified multilocus sequence typing protocol to genotype Kingella kingae from oropharyngeal swabs without bacterial isolation. [PDF]

BMC Microbiol
Houmami NE, Bzdrenga J, Pons JC, Minodier P, Durand GA, Oubraham A, Ceroni D, Yagupsky P, Raoult D, Bidet P, Fournier PE.   +10 more
europepmc   +2 more sources

Molecular Markers Reveal Epidemiological Patterns and Evolutionary Histories of the Human Pathogenic Cryptococcus

Frontiers in Cellular and Infection Microbiology, 2021
The human pathogenic Cryptococcus species are the main agents of fungal meningitis in humans and the causes of other diseases collectively called cryptococcosis.
Nan Hong, Nan Hong, Min Chen, Jianping Xu   +3 more
doaj   +1 more source

Phylogeny of Flavobacteria Group Isolated from Freshwater Using Multilocus Sequencing Analysis [PDF]

Genomics & Informatics, 2013
Sequence analysis of the 16S rRNA gene has been widely used for the classification of microorganisms. However, we have been unable to clearly identify five Flavobacterium species isolated from a freshwater by using the gene as a single marker, because ...
Seyoung Mun, Jungnam Lee, Siwon Lee, Kyudong Han, Tae-Young Ahn   +4 more
doaj   +1 more source

Advances in Traceability Typing and Identification of Foodborne Pathogens

Shipin gongye ke-ji, 2022
Foodborne pathogens are the main factors affecting food quality and safety. Timely and accurate strain typing data enable rapid detection of outbreak clusters, informing ongoing infection control and public health responses, which are important for ...
Yao LIU, Yuanmiao WEI, Ling LI, Lunzhao YI, Weiwei ZHAO, Ying SHANG, Jianxin CAO   +6 more
doaj   +1 more source

Establishment and Evaluation of a Core Genome Multilocus Sequence Typing Scheme for Whole-Genome Sequence-Based Typing of Pseudomonas aeruginosa

Journal of Clinical Microbiology, 2020
The environmental bacterium Pseudomonas aeruginosa, particularly multidrug-resistant clones, is often associated with nosocomial infections and outbreaks.
Hauke Tönnies, K. Prior, D. Harmsen, A. Mellmann   +3 more
semanticscholar   +1 more source

Development and implementation of a core genome multilocus sequence typing scheme for <i>Haemophilus influenzae</i>. [PDF]

Microb Genom
Krisna MA, Jolley KA, Monteith W, Boubour A, Hamers RL, Brueggemann AB, Harrison OB, Maiden MCJ.   +7 more
europepmc   +2 more sources

FastMLST: A Multi-core Tool for Multilocus Sequence Typing of Draft Genome Assemblies

bioRxiv, 2020
Multilocus Sequence Typing (MLST) is a precise microbial typing approach at the intra-species level for epidemiologic and evolutionary purposes. It operates by assigning a sequence type (ST) identifier to each specimen, based on a combination of alleles ...
E. Guerrero-Araya, M. Muñoz, C. Rodríguez, D. Paredes-Sabja   +3 more
semanticscholar   +1 more source

Rapid multi-locus sequence typing using microfluidic biochips. [PDF]

PLoS ONE, 2010
Multiple locus sequence typing (MLST) has become a central genotyping strategy for analysis of bacterial populations. The scheme involves de novo sequencing of 6-8 housekeeping loci to assign unique sequence types. In this work we adapted MLST to a rapid
Timothy D Read, Rosemary S Turingan, Christopher Cook, Heidi Giese, Ulrich Hans Thomann, Catherine C Hogan, Eugene Tan, Richard F Selden   +7 more
doaj   +1 more source

A Core Genome Multilocus Sequence Typing Scheme for Pseudomonas aeruginosa

Frontiers in Microbiology, 2020
Pseudomonas aeruginosa is a ubiquitous microorganism and an important opportunistic pathogen responsible for a broad spectrum of infections mainly in immunosuppressed and critically ill patients.
R. O. de Sales, L. B. Migliorini, R. Puga, B. Kocsis, P. Severino   +4 more
semanticscholar   +1 more source