Results 11 to 20 of about 34,999 (238)

Multilocus sequence typing breathes life into a microbial metagenome. [PDF]

PLoS ONE, 2006
Shot-gun sequencing of DNA isolated from the environment and the assembly of metagenomes from the resulting data has considerably advanced the study of microbial diversity.
Eshwar Mahenthiralingam, Adam Baldwin, Pavel Drevinek, Elke Vanlaere, Peter Vandamme, John J LiPuma, Chris G Dowson   +6 more
doaj   +7 more sources

Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica [PDF]

PLoS Pathogens, 2012
Salmonella enterica subspecies enterica is traditionally subdivided into serovars by serological and nutritional characteristics. We used Multilocus Sequence Typing (MLST) to assign 4,257 isolates from 554 serovars to 1092 sequence types (STs). The majority of the isolates and many STs were grouped into 138 genetically closely related clusters called ...
Mark Achtman, John Wain, François-Xavier Weill, Satheesh Nair, Zhemin Zhou, Vartul Sangal, Mary G Krauland, James L Hale, Heather Harbottle, Alexandra Uesbeck, Gordon Dougan, Lee H Harrison, Sylvain Brisse, S. Enterica MLST Study Group   +13 more
openaire   +10 more sources

Multilocus Sequence Typing for Characterization of Staphylococcus pseudintermedius [PDF]

Journal of Clinical Microbiology, 2013
ABSTRACT Staphylococcus pseudintermedius is an opportunistic pathogen in dogs. Four housekeeping genes with allelic polymorphisms were identified and used to develop an expanded multilocus sequence typing (MLST) scheme. The new seven-locus technique shows S.
Solyman, S. M., Black, C. C., Duim, B., Perreten, V., van Duijkeren, E., Wagenaar, J. A., Eberlein, L. C., Sadeghi, L. N., Videla, R., Bemis, D. A., Kania, S. A.   +10 more
openaire   +8 more sources

Multilocus Sequence Typing Tool for Cyclospora cayetanensis [PDF]

Emerging Infectious Diseases, 2016
Because the lack of typing tools for Cyclospora cayetanensis has hampered outbreak investigations, we sequenced its genome and developed a genotyping tool. We observed 2 to 10 geographically segregated sequence types at each of 5 selected loci.
Yaqiong Guo, Dawn M. Roellig, Na Li, Kevin Tang, Michael Frace, Ynes Ortega, Michael J. Arrowood, Yaoyu Feng, Yvonne Qvarnstrom, Lin Wang, Delynn M. Moss, Longxian Zhang, Lihua Xiao   +12 more
doaj   +3 more sources

Inaccurate Multilocus Sequence Typing of Acinetobacter baumannii [PDF]

Emerging Infectious Diseases, 2019
Multilocus sequence typing has been useful for genotyping pathogens in surveillance and epidemiologic studies. However, it cannot reflect the true relationships of isolates for species with very dynamic genomes.
Santiago Castillo-Ramírez, Lucía Graña-Miraglia   +1 more
doaj   +3 more sources

Expanded Multilocus Sequence Typing for Burkholderia Species [PDF]

Journal of Clinical Microbiology, 2009
ABSTRACT PCR primers targeting loci in the current Burkholderia cepacia complex multilocus sequence typing scheme were redesigned to (i) more reliably amplify these loci from B . cepacia complex species, (ii) amplify these same loci from additional
Spilker, T., Baldwin, A., Bumford, A., Dowson, C. G, Mahenthiralingam, Eshwar, LiPuma, J. J.   +5 more
openaire   +4 more sources

Multilocus sequence typing (MLST) for characterization of Enterobacter cloacae. [PDF]

PLoS ONE, 2013
Enterobacter cloacae is an important emerging pathogen, which sometime causes respiratory infection, surgical site infection, urinary infection, sepsis, and outbreaks at neonatal units.
Tohru Miyoshi-Akiyama, Kayoko Hayakawa, Norio Ohmagari, Masahiro Shimojima, Teruo Kirikae   +4 more
doaj   +4 more sources

Multilocus sequence typing and variations in the oprD gene of Pseudomonas aeruginosa isolated from a hospital in China

Infection and Drug Resistance, 2018
Huiqin Liu,1 Weina Kong,1 Weina Yang,2 Gukui Chen,1 Haihua Liang,1 Yani Zhang1 1College of Life Sciences, Northwest University, Shaanxi, China; 2Department of Clinical Laboratory, The Children’s Hospital of Xi’an City, Shaanxi, China ...
Liu H, Kong W, Yang W, Chen G, Liang H, Zhang Y   +5 more
doaj   +1 more source

Multilocus sequence typing of IncN plasmids [PDF]

Journal of Antimicrobial Chemotherapy, 2011
Incompatibility group N (IncN) plasmids have been associated with the dissemination of antimicrobial resistance and are a major vehicle for the spread of bla(VIM-1) in humans and bla(CTX-M-1) in animals. A plasmid multilocus sequence typing (pMLST) scheme was developed for rapid categorization of IncN plasmids.Twelve fully sequenced IncN plasmids ...
García-Fernández A, Villa L, Moodley A, Hasman H, Miriagou V, Guardabassi L, Carattoli A.   +6 more
openaire   +3 more sources

Multilocus sequence typing of Propionibacterium freudenreichii [PDF]

International Journal of Food Microbiology, 2011
Propionibacterium freudenreichii is used as a ripening culture in Swiss cheese manufacture. This study investigates the molecular diversity and the population structure of this bacterium via multilocus sequence typing (MLST). Internal fragments of seven genes sequenced for 113 strains of different subspecies and origins allowed the resolution of 46 ...
Dalmasso, Marion, Nicolas, Pierre, Falentin, Hélène, Valence, Florence, Tanskanen, Jarna, Jatila, Hanna, Salusjärvi, Tuomas, Thierry, Anne   +7 more
openaire   +6 more sources