Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment
BMC Bioinformatics, 2011 Background Many Bioinformatics studies begin with a multiple sequence alignment as the foundation for their research. This is because multiple sequence alignment can be a useful technique for studying molecular evolution and analyzing sequence structure ...
Essam Daryl +2 more
doaj +1 more source
PoMSA: An Efficient and Precise Position-based Multiple Sequence Alignment Technique [PDF]
arXiv, 2017 Analyzing the relation between a set of biological sequences can help to identify and understand the evolutionary history of these sequences and the functional relations among them. Multiple Sequence Alignment (MSA) is the main obstacle to proper design and develop homology and evolutionary modeling applications since these kinds of applications ...
arxiv
Kalign – an accurate and fast multiple sequence alignment algorithm
BMC Bioinformatics, 2005 Background The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families for conserved motifs, phylogeny, structural properties, and to improve ...
Sonnhammer Erik LL, Lassmann Timo
doaj +1 more source
A comparative analysis of progressive multiple sequence alignment approaches using UPGMA and neighbor joining based guide trees [PDF]
International Journal of Computer Science, Engineering and
Information Technology (IJCSEIT), Vol. 5,No.3/4, August 2015, 2015 Multiple sequence alignment is increasingly important to bioinformatics, with several applications ranging from phylogenetic analyses to domain identification. There are several ways to perform multiple sequence alignment, an important way of which is the progressive alignment approach studied in this work.
arxiv
Zero Knowledge Proof for Multiple Sequence Alignment [PDF]
arXivMultiple sequence alignment (MSA) is a fundamental algorithm in bioinformatics. In a situation when the alignment might need to be protected while revealing the other information such the input sequences and the alignment score, zero knowledge proof can be used.
arxiv
Accurate Reconstruction of Molecular Phylogenies for Proteins Using Codon and Amino Acid Unified Sequence Alignments (CAUSA) [PDF]
, 2011 Based on molecular clock hypothesis, and neutral theory of molecular evolution, molecular phylogenies have been widely used for inferring evolutionary history of organisms and individual genes.
Chandra Sekhar Pedamallu +7 more
core +1 more source
RNAmountAlign: efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment [PDF]
arXiv, 2018 Alignment of structural RNAs is an important problem with a wide range of applications. Since function is often determined by molecular structure, RNA alignment programs should take into account both sequence and base-pairing information for structural homology identi^Lcation.
arxiv
1. Types of Alignment: Presentations & Demos Assignment [PDF]
, 2016 Pairwise Alignment: DNA Pairwise Alignment: Protein Multiple Sequence Alignment: DNA Multiple Sequence Alignment ...
O\u27Leary-Driscoll, Sarah
core +1 more source
HMMerge: an ensemble method for multiple sequence alignment. [PDF]
Bioinform Adv, 2023 Park M, Warnow T.
europepmc +1 more source
Multiple sequence alignment with hierarchical clustering
Nucleic Acids Research, 1988 An algorithm is presented for the multiple alignment of sequences, either proteins or nucleic acids, that is both accurate and easy to use on microcomputers. The approach is based on the conventional dynamic-programming method of pairwise alignment.
openaire +5 more sources