Results 161 to 170 of about 1,261,273 (206)
ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function. [PDF]
BMC Bioinformatics, 2019 Zhan Q +5 more
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Bacterial Foraging Optimization -Genetic Algorithm for Multiple Sequence Alignment with Multi-Objectives. [PDF]
Sci Rep, 2017 Manikandan P, Ramyachitra D.
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Protein multiple sequence alignment benchmarking through secondary structure prediction. [PDF]
Bioinformatics, 2017 Le Q, Sievers F, Higgins DG.
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Parallelized pairwise sequence alignment using CUDA on multiple GPUs
BMC Bioinformatics, 2009 Jung Sungbo
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Evaluating the Accuracy and Efficiency of Multiple Sequence Alignment Methods
Evolutionary Bioinformatics, 2014 Muhammad Tariq Pervez +10 more
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Current Opinion in Structural Biology, 2006
Multiple sequence alignments are an essential tool for protein structure and function prediction, phylogeny inference and other common tasks in sequence analysis. Recently developed systems have advanced the state of the art with respect to accuracy, ability to scale to thousands of proteins and flexibility in comparing proteins that do not share the ...
Robert C. Edgar, Serafim Batzoglou
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Multiple sequence alignments are an essential tool for protein structure and function prediction, phylogeny inference and other common tasks in sequence analysis. Recently developed systems have advanced the state of the art with respect to accuracy, ability to scale to thousands of proteins and flexibility in comparing proteins that do not share the ...
Robert C. Edgar, Serafim Batzoglou
openaire +4 more sources
Multiple Sequence Alignment [PDF]
, 2016 The increasing importance of Next Generation Sequencing (NGS) techniques has highlighted the key role of multiple sequence alignment (MSA) in comparative structure and function analysis of biological sequences. MSA often leads to fundamental biological insight into sequence-structure-function relationships of nucleotide or protein sequence families ...
K. Anton Feenstra +5 more
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2003
Publisher Summary This chapter discusses various aspects of multiple sequence alignment. Dynamic programming can be generalized to more than two sequences where one finds the multiple alignments with the best score according to the scoring scheme. Gaps are scored according to their length and the number of sequences that they occur in and the method ...
Desmond G. Higgens, William R. Taylor
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Publisher Summary This chapter discusses various aspects of multiple sequence alignment. Dynamic programming can be generalized to more than two sequences where one finds the multiple alignments with the best score according to the scoring scheme. Gaps are scored according to their length and the number of sequences that they occur in and the method ...
Desmond G. Higgens, William R. Taylor
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Journal of Molecular Biology, 1986
A method has been developed for aligning segments of several sequences at once. The number of search steps depends only polynomially on the number of sequences, instead of exponentially, because most alignments are rejected without being evaluated explicitly. A data structure herein called the "heap" facilitates this process.
David J. Bacon, Wayne F. Anderson
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A method has been developed for aligning segments of several sequences at once. The number of search steps depends only polynomially on the number of sequences, instead of exponentially, because most alignments are rejected without being evaluated explicitly. A data structure herein called the "heap" facilitates this process.
David J. Bacon, Wayne F. Anderson
openaire +3 more sources
An Overview of Multiple Sequence Alignment
Current Protocols in Bioinformatics, 2003AbstractMultiple sequence alignment is perhaps the most commonly applied bioinformatics technique. It often leads to fundamental biological insight into sequence‐structure‐function relationships of nucleotide or protein sequence families. In this unit, an overview of multiple sequence alignment techniques is presented, covering a history of nearly 30 ...
Jens Kleinjung +2 more
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