Divide-and-conquer multiple alignment with segment-based constraints [PDF]
, 2003 Sammeth M, Morgenstern B, Stoye J. Divide-and-conquer multiple alignment with segment-based constraints. BIOINFORMATICS. 2003;19(Suppl 2):ii189-ii195.A large number of methods for multiple sequence alignment are currenty available.
Sammeth, Michael +2 more
core +1 more source
Brain Storm Optimization for Multiple Sequence Alignment problem [PDF]
Assiut University Journal of Multidisciplinary Scientific Research, 2022 Brain Storm Optimization (BSO) is one of the most effective swarm intelligence methods for finding optimality in optimization problems by simulating the human brainstorming process.
doaj +1 more source
Fast and sensitive multiple alignment of large genomic sequences [PDF]
, 2003 Brudno M, Chapman M, Göttgens B, Batzoglou S, Morgenstern B. Fast and sensitive multiple alignment of large genomic sequences. BMC Bioinformatics.
Brudno, Michael +13 more
core +3 more sources
Lower bounds on multiple sequence alignment using exact 3-way alignment
BMC Bioinformatics, 2007 Background Multiple sequence alignment is fundamental. Exponential growth in computation time appears to be inevitable when an optimal alignment is required for many sequences. Exact costs of optimum alignments are therefore rarely computed. Consequently
Colbourn Charles J, Kumar Sudhir
doaj +1 more source
QAlign: quality-based multiple alignments with dynamic phylogenetic analysis [PDF]
, 2003 Sammeth M, Rothgänger J, Esser W, Albert J, Stoye J, Harmsen D. QAlign: quality-based multiple alignments with dynamic phylogenetic analysis. BIOINFORMATICS.
Esser, Wolfram +5 more
core +1 more source
Reticular alignment: A progressive corner-cutting method for multiple sequence alignment
BMC Bioinformatics, 2010 Background In this paper, we introduce a progressive corner cutting method called Reticular Alignment for multiple sequence alignment. Unlike previous corner-cutting methods, our approach does not define a compact part of the dynamic programming table ...
Novák Ádám +3 more
doaj +1 more source
Enhanced Genetic Method for Optimizing Multiple Sequence Alignment
Mathematics, 2023 In the realm of bioinformatics, Multiple Sequence Alignment (MSA) is a pivotal technique used to optimize the alignment of multiple biological sequences, guided by specific scoring criteria.
Mohammed K. Ibrahim +3 more
doaj +1 more source
Sequence alignment, mutual information, and dissimilarity measures for constructing phylogenies [PDF]
, 2011 Background: Existing sequence alignment algorithms use heuristic scoring schemes based on biological expertise, which cannot be used as objective distance metrics.
Penner, Orion +8 more
core +2 more sources
OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy
BMC Bioinformatics, 2003 Background The alignment of two or more protein sequences provides a powerful guide in the prediction of the protein structure and in identifying key functional residues, however, the utility of any prediction is completely dependent on the accuracy of ...
Searle Stephen MJ +4 more
doaj +1 more source
Algorithms for normalized multiple sequence alignments
CoRR, 2021 24 pages, 2 figures, 5 ...
Eloi Araujo +3 more
openaire +5 more sources