Results 31 to 40 of about 6,883,088 (299)
Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family [PDF]
, 2008 Wagner H, Morgenstern B, Dress A. Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family. Algorithms for Molecular Biology.
Andreas Dress +8 more
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Grammar-based distance in progressive multiple sequence alignment
BMC Bioinformatics, 2008 Background We propose a multiple sequence alignment (MSA) algorithm and compare the alignment-quality and execution-time of the proposed algorithm with that of existing algorithms.
Sayood Khalid +2 more
doaj +1 more source
MOSAL : software tools for multiobjective sequence alignment [PDF]
, 2014 Multiobjective sequence alignment brings the advantage of providing a set of alignments that represent the trade-off between performing insertion/deletions and matching symbols from both sequences. Each of these alignments provide a potential explanation
Monsanto Pinheiro, Miguel +8 more
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Developments in Algorithms for Sequence Alignment: A Review
Biomolecules, 2022 The continuous development of sequencing technologies has enabled researchers to obtain large amounts of biological sequence data, and this has resulted in increasing demands for software that can perform sequence alignment fast and accurately.
Jiannan Chao, Furong Tang, Lei Xu
doaj +1 more source
Protein Multiple Sequence Alignment [PDF]
, 2008 Protein sequence alignment is the task of identifying evolutionarily or structurally related positions in a collection of amino acid sequences. Although the protein alignment problem has been studied for several decades, many recent studies have demonstrated considerable progress in improving the accuracy or scalability of multiple and pairwise ...
Chuong B, Do, Kazutaka, Katoh
openaire +2 more sources
Fine-tuning structural RNA alignments in the twilight zone [PDF]
, 2010 Bremges A, Schirmer S, Giegerich R. Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics. 2010;11(1): 222.Background A widely used method to find conserved secondary structure in RNA is to first construct a multiple sequence ...
Bremges Andreas +8 more
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Alvira : comparative genomics of viral strains [PDF]
, 2007 The Alvira tool is a general purpose multiple sequence alignment viewer with a special emphasis on the comparative analysis of viral genomes. This new tool has been devised specifically to address the problem of the simultaneous analysis of a large ...
Fremez, Romain +7 more
core +1 more source
Visual Sequence Alignment in VB6
, 2022 Visual Sequence Alignment in VB6 - This simple implementation makes an alignment between two ...
Paul A. Gagniuc (1818325)
core +1 more source
Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics, 2013 This paper introduces a simple and effective approach to improve the accuracy of multiple sequence alignment. We use a natural measure to estimate the similarity of the input sequences, and based on this measure, we align the input sequences differently.
Yongtao Ye +6 more
openaire +7 more sources
Multiple sequence alignment with user-defined anchor points
Algorithms for Molecular Biology, 2006 Background Automated software tools for multiple alignment often fail to produce biologically meaningful results. In such situations, expert knowledge can help to improve the quality of alignments.
Pöhler Dirk +3 more
doaj +1 more source