Results 1 to 10 of about 28,841,045 (284)
MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution [PDF]
BMC Bioinformatics, 2005 Background MATLAB is a high-performance language for technical computing, integrating computation, visualization, and programming in an easy-to-use environment.
Xia Xuhua +3 more
doaj +6 more sources
Diversification of Neoaves: integration of molecular sequence data and fossils [PDF]
Biology Letters, 2006 Patterns of diversification and timing of evolution within Neoaves, which includes almost 95% of all bird species, are virtually unknown. On the other hand, molecular data consistently indicate a Cretaceous origin of many neoavian lineages and the fossil record seems to support an Early Tertiary diversification. Here, we present the first well-resolved
Per G P, Ericson +9 more
semanticscholar +3 more sources
BMC Research Notes, 2022 Objective Elizabethkingia meningoseptica is a multidrug resistance strain which primarily causes meningitis in neonates and immunocompromised patients. Being a nosocomial infection causing agent, less information is available in literature, specifically,
Neha Girdhar +2 more
doaj +3 more sources
SEView: A Java Applet for Browsing Molecular Sequence Data
In Silico Biology: Journal of Biological Systems Modeling and Multi-Scale Simulation, 1998 SEView is a Java applet that represents known or predicted elements of a protein or nucleotide sequence. It replaces or supplements the textual format of databases or program output with an interactive, graphical representation that is easily available ...
Thomas Junier, P. Bucher
semanticscholar +5 more sources
Fixed Character States and the Optimization of Molecular Sequence Data
Cladistics, 1999 A method is proposed to optimize molecular sequence data that does not employ multiple sequence alignment. This method treats entire homologous contiguous stretches of sequence data as individual characters. This sequence is treated as the homologous unit employed in phylogeny reconstruction.
W. Wheeler
semanticscholar +3 more sources
New molecular sequence data and species trees for North American whipsnakes [PDF]
Data in Brief, 2018 In this data article we present species trees based on coalescent species delimitation results for North American whipsnakes, as well as metadata pertaining to the article ''The effect of missing data on coalescent species delimitation and a taxonomic ...
Kyle A. O’Connell, Eric N. Smith
doaj +3 more sources
BEAST: Bayesian evolutionary analysis by sampling trees [PDF]
BMC Evolutionary Biology, 2007 Background The evolutionary analysis of molecular sequence variation is a statistical enterprise. This is reflected in the increased use of probabilistic models for phylogenetic inference, multiple sequence alignment, and molecular population genetics ...
Drummond Alexei J, Rambaut Andrew
doaj +2 more sources
Molecular sequence data of hepatitis B virus and genetic diversity after vaccination. [PDF]
American Journal of Epidemiology, 2009 The effect of vaccination programs on transmission of infectious disease is usually assessed by monitoring programs that rely on notifications of symptomatic illness. For monitoring of infectious diseases with a high proportion of asymptomatic cases or a low reporting rate, molecular sequence data combined with modern coalescent-based techniques offer ...
W. M. van Ballegooijen +5 more
semanticscholar +5 more sources
Classification of molecular sequence data using Bayesian phylogenetic mixture models [PDF]
Computational Statistics & Data Analysis, 2014 Rate variation among the sites of a molecular sequence is commonly found in applications of phylogenetic inference. Several approaches exist to account for this feature but they do not usually enable the investigator to pinpoint the sites that evolve under one or another rate of evolution in a straightforward manner.
Elisa Loza-Reyes +2 more
openaire +6 more sources
A public HTLV-1 molecular epidemiology database for sequence management and data mining. [PDF]
PLoS ONE, 2012 BACKGROUND: It is estimated that 15 to 20 million people are infected with the human T-cell lymphotropic virus type 1 (HTLV-1). At present, there are more than 2,000 unique HTLV-1 isolate sequences published.
Thessika Hialla Almeida Araujo +9 more
doaj +5 more sources