Results 21 to 30 of about 2,920,533 (298)

Bootstrap confidence for molecular evolutionary estimates from tumor bulk sequencing data

Frontiers in Bioinformatics, 2023
Bulk sequencing is commonly used to characterize the genetic diversity of cancer cell populations in tumors and the evolutionary relationships of cancer clones. However, bulk sequencing produces aggregate information on nucleotide variants and their sample frequencies, necessitating computational methods to predict distinct clone sequences and their ...
Jared Huzar, Madelyn Shenoy, Maxwell D. Sanderford, Sudhir Kumar, Sudhir Kumar, Sudhir Kumar, Sayaka Miura, Sayaka Miura   +7 more
openaire   +4 more sources

Genotyping of Chlamydophila psittaci in Human Samples

Emerging Infectious Diseases, 2006
Chlamydophila (formerly Chlamydia) psittaci genotypes A, B, C, and a new genotype most similar to the 6BC type strain were found in 10 humans with psittacosis by outer membrane protein A gene sequencing.
Edou R. Heddema, Erik J. van Hannen, Birgitta Duim, Christina M.J.E. VandenBroucke-Grauls, Yvonne Pannekoek   +4 more
doaj   +1 more source

Data incongruence and the problem of avian louse phylogeny [PDF]

, 2004
Recent studies based on different types of data (i.e. morphological and molecular) have supported conflicting phylogenies for the genera of avian feather lice (Ischnocera: Phthiraptera).
Archie J. W., Bandelt H.-J., Blagoveshtchenskii D. I., Bremer K., Choe J. C., Clay T., Clayton D. H., Clayton D. H., Corpet F., Cunningham C. W., Danforth B. N., Darlu P., Eichler W. D., Emerson K. C., Estabrook G. F., Faith D. P., Felsenstein J., Hafner M. S., Hafner M. S., Hillis D. M., Hillis D. M., Hopkins G. H. E., Huelsenbeck J. P., Johnson K. P., Johnson K. P., Jow H., Kallersjo M., Kellogg V. L., Kluge A. G., Konigsmann E., Lockhart P. J., Lockhart P. J., Lopez P., Loye J. E., Lyal C. H. C., Maddison W. P., Meacham C. A., Mey E., Mey E., Page R. D. M., Page R. D. M., Page R. D. M., Palma R. L., Price R. D., Rambaut A., Reed D. L., Rozsa L., Rzhetsky A., Simon C., Swofford D. L., Wheeler W. C., Wilkinson M., Zharkikh A.   +52 more
core   +1 more source

The Barcode of Life Data Portal: bridging the biodiversity informatics divide for DNA barcoding. [PDF]

PLoS ONE, 2011
With the volume of molecular sequence data that is systematically being generated globally, there is a need for centralized resources for data exploration and analytics.
Indra Neil Sarkar, Michael Trizna
doaj   +1 more source

ENA as an Information Hub [PDF]

, 2010
The European Nucleotide Archive (ENA; "http://www.ebi.ac.uk/ena/":http://www.ebi.ac.uk/ena/) is a comprehensive repository for public nucleotide sequence data from nearly four hundred thousand taxonomic nodes.
Bob Vaughan, Guy Cochrane, Nadeem Faruque, Petra ten Hoopen, Richard Gibson, Ruth Akhtar   +5 more
core   +2 more sources

Optimizing nucleic acid sequences for a molecular data recorder [PDF]

Proceedings of the Genetic and Evolutionary Computation Conference, 2017
We recently reported the design for a DNA nano-device that can record and store molecular signals. Here we present an evolutionary algorithm tailored to optimising nucleic acid sequences that predictively fold into our desired target structures. In our approach, a DNA device is first specified abstractly: the topology of the individual strands and ...
Jerzy Kozyra, Harold Fellermann, Ben Shirt-Ediss, Annunziata Lopiccolo, Natalio Krasnogor   +4 more
openaire   +1 more source

Foot-and-Mouth Disease Virus Serotype A in Egypt

Emerging Infectious Diseases, 2007
We describe the characterization of a foot-and-mouth disease (FMD) serotype A virus responsible for recent outbreaks of disease in Egypt. Phylogenetic analysis of VP1 nucleotide sequences demonstrated a close relationship to recent FMD virus isolates ...
Nick J. Knowles, Jemma Wadsworth, Scott M. Reid, Katherine G. Swabey, Alaa A. El-Kholy, Adel Omar Abd El-Rahman, Hatem M. Soliman, Katja Ebert, Nigel P. Ferris, Geoffrey H. Hutchings, Robert J. Statham, Donald P. King, David J. Paton   +12 more
doaj   +1 more source

Molecular phylogeny of Asian Meconopsis based on nuclear ribosomal and chloroplast DNA sequence data. [PDF]

PLoS ONE, 2014
The taxonomy and phylogeny of Asian Meconopsis (Himalayan blue poppy) remain largely unresolved. We used the internal transcribed spacer (ITS) region of nuclear ribosomal DNA (nrDNA) and the chloroplast DNA (cpDNA) trnL-F region for phylogenetic ...
Yu-Cheng Liu, Ya-Nan Liu, Fu-Sheng Yang, Xiao-Quan Wang   +3 more
doaj   +1 more source

The genetics of colored sequence synesthesia: Evidence of linkage to chromosome 16q and genetic heterogeneity for the condition [PDF]

, 2009
Synesthesia is a perceptual condition in which normal sensory stimulation can trigger anomalous sensory experiences. For example, synesthetes may experience colors in response to sounds, tastes in response to words, or smells in response to touch.
Anand K. Sarma, David M. Eagleman, Dianna M. Milewicz, Kwanghyuk Lee, Molly Bray, Nili Avidan, Rejnal Tushe, Stephanie S. Nelson, Suzanne M. Leal   +8 more
core   +2 more sources

El análisis molecular y el inmunogénico sugieren la ausencia de las proteínas hidrofílicas de superficie en Leishmania (Viannia) panamensis

Biomédica: revista del Instituto Nacional de Salud, 2008
Introducción. Los dos subgéneros en los cuales se divide el género Leishmania: Viannia y Leishmania, presentan diferencias significativas en las manifestaciones clínicas que causan, en su comportamiento de crecimiento en cultivos in vitro, en sus ...
Marcel Marín, Yudy Alexandra Aguilar, José Robinson Ramírez, Omar Triana, Carlos Enrique Muskus   +4 more
doaj   +1 more source