DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment. [PDF]
BMC Bioinformatics, 2020 Fukuda H, Tomii K.
europepmc +1 more source
A hybrid genetic search for multiple sequence alignment [PDF]
, 2006 Seung‐Hyun Moon +2 more
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Toward Design Principles for Biomolecular Condensates for Metabolic Pathways
Advanced Biology, EarlyView.Biomolecular condensates are membrane‐less compartments found through‐out nature which can serve as reaction crucibles for biochemical processes. This review explores the design strategies underlying how condensates can be used in biotechnology to enhance multistep enzyme cascades including enhancement by mass action and substrate channeling, and ...
Alain A.M. André +3 more
wiley +1 more source
State of the art: refinement of multiple sequence alignments [PDF]
, 2006 Saikat Chakrabarti +5 more
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ACache: Using Caching to Improve the Performance of Multiple Sequence Alignments [PDF]
, 2006 Xiaoming Tu, Kajal Claypool, C.X. Chen
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FAIR and Structured Data: A Domain Ontology Aligned with Standard‐Compliant Tensile Testing
Advanced Engineering Materials, EarlyView.The digitalization in materials science and engineering is discussed, emphasizing the importance of digital workflows and ontologies in managing diverse experimental data. Challenges such as quality assurance and data interoperability are tackled with semantic web technologies, focusing and introducing the tensile test ontology (TTO).
Markus Schilling +6 more
wiley +1 more source
eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities [PDF]
, 2007 Satish Chikkagoudar +2 more
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An Automatized Simulation Workflow for Powder Pressing Simulations Using SimStack
Advanced Engineering Materials, EarlyView.The implementation of Workflow active Nodes (WaNos) for the convenient execution and automated evaluation of discrete element method calculations of powder pressing is showcased. Purposeful combination of WaNos creates timesaving and resource‐effective computational workflows.
Bjoern Mieller +2 more
wiley +1 more source
Multiple Sequence Alignment Averaging Improves Phylogeny Reconstruction. [PDF]
Syst Biol, 2019 Ashkenazy H +4 more
europepmc +1 more source
Advanced Engineering Materials, EarlyView.Integrity constraints enforce consistency and completeness on data. The article discusses a newly developed validator for checking integrity constraints in Shapes Constraint Language (SHACL) through reduction to SPARQL Protocol and RDF Query Language (SPARQL) queries. It can be used with systems for ontology‐based database access.
Özgür L. Özçep +5 more
wiley +1 more source