Peptide vocabulary analysis reveals ultra-conservation and homonymity in protein sequences [PDF]
, 2007 A new algorithm is presented for vocabulary analysis (word detection) in texts of human origin. It performs at 60%–70% overall accuracy and greater than 80% accuracy for longer words, and approximately 85% sensitivity on Alice in Wonderland, a ...
Gatherer, D. +2 more
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Online Inference for Multiple Changepoint Problems. [PDF]
, 2007 We propose an on-line algorithm for exact filtering of multiple changepoint problems. This algorithm enables simulation from the true joint posterior distribution of the number and position of the changepoints for a class of changepoint models.
Liu, Z, Fearnhead, P
core +5 more sources
Exact BER Calculation of Asynchronous DS-CDMA Systems Communicating over Hoyt Channels [PDF]
, 2006 An asynchronous binary DS-CDMA system using random spreading sequences is considered in flat Hoyt fading channels. A new closed-form expression is derived for the conditional characteristic function of the multiple access interference.
Liu, X., Hanzo, L.
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Multiple sequence alignment with the Divide-and-Conquer method. [PDF]
, 1998 Stoye J. Multiple sequence alignment with the Divide-and-Conquer method. Gene. 1998;211(2):GC45-GC56.An improved algorithm for the simultaneous alignment of multiple protein and nucleic acid sequences, the Divide-and-Conquer Alignment procedure (DCA), is
Jens Stoye +1 more
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Neural Network Ensembles for Time Series Prediction [PDF]
, 2007 Rapidly evolving businesses generate massive amounts of time-stamped data sequences and defy a demand for massively multivariate time series analysis. For such data the predictive engine shifts from the historical auto-regression to modelling complex
Ruta, Dymitr +3 more
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Distinguishing sequences for partially specified FSMs [PDF]
, 2014 Distinguishing Sequences (DSs) are used inmany Finite State Machine (FSM) based test techniques. Although Partially Specified FSMs (PSFSMs) generalise FSMs, the computational complexity of constructing Adaptive and Preset DSs (ADSs/PDSs) for PSFSMs has ...
Uraz Cengiz Türker +3 more
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RNA-sequencing and mass-spectrometry proteomic time-series analysis of T-cell differentiation identified multiple splice variants models that predicted validated protein biomarkers in inflammatory diseases [PDF]
Frontiers in Molecular Biosciences, 2021 Profiling of mRNA expression is an important method to identify biomarkers but complicated by limited correlations between mRNA expression and protein abundance. We hypothesised that these correlations could be improved by mathematical models based on measuring splice variants and time delay in protein translation.
Rasmus Magnusson +21 more
openaire +6 more sources
OrthoSelect: a protocol for selecting orthologous groups in phylogenomics [PDF]
, 2009 Background: Phylogenetic studies using expressed sequence tags (EST) are becoming a standard approach to answer evolutionary questions. Such studies are usually based on large sets of newly generated, unannotated, and error-prone EST sequences from ...
Schreiber Fabian +16 more
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Summarizing a set of time series by averaging: From Steiner sequence to compact multiple alignment
Theoretical Computer Science, 2012 zbMATH Open Web Interface contents unavailable due to conflicting licenses.
François Petitjean, Pierre Gançarski
openaire +3 more sources
Fine-tuning structural RNA alignments in the twilight zone [PDF]
, 2010 Bremges A, Schirmer S, Giegerich R. Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics. 2010;11(1): 222.Background A widely used method to find conserved secondary structure in RNA is to first construct a multiple sequence ...
Bremges Andreas +8 more
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