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CFSP: a collaborative frequent sequence pattern discovery algorithm for nucleic acid sequence classification [PDF]
PeerJ, 2020 Background Conserved nucleic acid sequences play an essential role in transcriptional regulation. The motifs/templates derived from nucleic acid sequence datasets are usually used as biomarkers to predict biochemical properties such as protein binding ...
He Peng
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Enlarged Similarity of Nucleic Acid Sequences [PDF]
DNA Research, 1996 The concept of nucleic acid sequence base alternations is presented. The number of base alterations for the sequences of different length is established. The definition of "enlarged similarity" of nucleic acids sequences on the basis of sequence base alterations is introduced.
Eugene Korotkov, Maria A. Korotkova
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Multiple sequence alignments of partially coding nucleic acid sequences [PDF]
BMC Bioinformatics, 2005 Background High quality sequence alignments of RNA and DNA sequences are an important prerequisite for the comparative analysis of genomic sequence data.
Fried Claudia +3 more
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Ligation with Nucleic Acid Sequence–Based Amplification [PDF]
The Journal of Molecular Diagnostics, 2012 This work presents a novel method for detecting nucleic acid targets using a ligation step along with an isothermal, exponential amplification step. We use an engineered ssDNA with two variable regions on the ends, allowing us to design the probe for optimal reaction kinetics and primer binding. This two-part probe is ligated by T4 DNA Ligase only when
Aartik Sarma +7 more
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Development of nucleic acid-based RAA test strip assay for the rapid detection of foot-and-mouth disease virus [PDF]
Frontiers in Veterinary ScienceFoot-and-mouth disease virus (FMDV) causes blister-like lesions in animals, leading to significant economic losses in animal husbandry. Accurate and rapid detection of FMD is crucial for effective prevention and control.
Wenxian Chen +10 more
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Protein-Based Anchoring Methods for Nucleic Acid Detection in Lateral Flow Format Assays
Micromachines, 2023 The use of lateral flow assays to detect nucleic acid targets has many applications including point-of-care diagnostics, environmental monitoring, and food safety.
Kira Hallerbach +6 more
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Biosensors, 2021 Enteroviruses are ubiquitous mammalian pathogens that can produce mild to life-threatening disease. We developed a multimodal, rapid, accurate and economical point-of-care biosensor that can detect nucleic acid sequences conserved amongst 96% of all ...
Veeren M. Chauhan +5 more
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NASCUP: Nucleic Acid Sequence Classification by Universal Probability
IEEE Access, 2021 Nucleic acid sequence classification is a fundamental task in the field of bioinformatics. Due to the increasing amount of unlabeled nucleotide sequences, fast and accurate classification of them on a large scale has become crucial.
Sunyoung Kwon +5 more
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