Results 71 to 80 of about 13,288,132 (297)

Sequence Flow: interactive web application for visualizing partial order alignments

open access: yesBMC Genomics
Background Multiple sequence alignment (MSA) has proven extremely useful in computational biology, especially in inferring evolutionary relationships via phylogenetic analysis and providing insight into protein structure and function.
Krzysztof Zdąbłasz   +2 more
doaj   +1 more source

A Reduced Order Model to Predict Transient Flows around Straight Bladed Vertical Axis Wind Turbines

open access: yesEnergies, 2018
We develop a reduced order model to represent the complex flow behaviour around vertical axis wind turbines. First, we simulate vertical axis turbines using an accurate high order discontinuous Galerkin–Fourier Navier–Stokes Large Eddy Simulation solver ...
Soledad Le Clainche, Esteban Ferrer
doaj   +1 more source

Unsteady Lift Prediction with a Higher-Order Potential Flow Method

open access: yesAerospace, 2020
An unsteady formulation of the Kutta–Joukowski theorem has been used with a higher-order potential flow method for the prediction of three-dimensional unsteady lift.
Julia A. Cole   +4 more
doaj   +1 more source

Contingent Fees in Order Flow Auctions

open access: yesCoRR, 2023
Many early order flow auction designs handle the payment for orders when they execute on the chain rather than when they are won in the auction. Payments in these auctions only take place when the orders are executed, creating a free option for whoever wins the order.
openaire   +2 more sources

Emerging experimental and computational methods for studying redox‐regulated structural transitions

open access: yesFEBS Letters, EarlyView.
Redox reactions can reshape proteins and alter how they behave in cells, with important consequences for health and disease. This review explores emerging experimental and computational approaches for discovering these redox‐sensitive protein switches, revealing their structural effects, and predicting their behavior, opening new opportunities to ...
Tasneem Rass   +2 more
wiley   +1 more source

Flow equations and normal ordering: a survey [PDF]

open access: yesJournal of Physics A: Mathematical and General, 2006
First we give an introduction to the method of diagonalizing or block-diagonalizing continuously a Hamiltonian and explain how this procedure can be used to analyze the two-dimensional Hubbard model. Then we give a short survey on applications of this flow equation on other models. Finally we outline, how symmetry breaking can be introduced by means of
openaire   +2 more sources

‘Guide and Prejudice’— How Argonautes recognize targets across domains of life

open access: yesFEBS Letters, EarlyView.
Argonaute proteins use short nucleic‐acid guides to locate and regulate specific targets across all domains of life. Despite striking diversity—from human gene silencing to bacterial immune defence—all Argonautes share a conserved three‐stage recognition logic: guide‐directed sampling, progressive target pairing with a conformational checkpoint and ...
Jack P. K. Bravo
wiley   +1 more source

Root, flow and order polytopes with connections to toric geometry

open access: yesForum of Mathematics, Sigma
In this paper, we study the class of polytopes which can be obtained by taking the convex hull of some subset of the points $\{e_i-e_j \ \vert \ i \neq j\} \cup \{\pm e_i\}$ in $\mathbb {R}^n$ , where $e_1,\dots ,e_n$ is the standard ...
Konstanze Rietsch   +1 more
doaj   +1 more source

First order flow equations for nonextremal black holes in AdS (super)gravity

open access: yesJournal of High Energy Physics, 2017
We consider electrically charged static nonextremal black holes in d-dimensional Einstein-Maxwell-(A)dS gravity, whose horizon is a generic Einstein space in d − 2 dimensions.
Dietmar Klemm, Marco Rabbiosi
doaj   +1 more source

Structures of mycobacterial 3‐methylcrotonyl‐CoA carboxylase reveal carrier‐domain translocation between catalytic sites

open access: yesFEBS Letters, EarlyView.
Mycobacterial 3‐methylcrotonyl‐CoA carboxylase uses a mobile biotin‐carrying domain to shuttle a carboxyl group between two catalytic sites, enabling carboxylation of 3‐methylcrotonyl‐CoA during leucine breakdown. Cryo‐electron microscopy captures the carrier at both sites and reveals an inward loop movement that may prevent futile rebinding to the ...
Ajit Yadav   +2 more
wiley   +1 more source

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