Results 21 to 30 of about 4,265 (160)

Integration of genome and transcriptome reveal molecular regulation mechanism of early flowering trait in Prunus genus (Prunus mume and Prunus persica)

Frontiers in Plant Science, 2022
Flowering time is crucial for the survival and reproduction. Prunus genus belongs to the Rosaceae family and includes several hundred species of flowering trees and shrubs with important ornamental and economic values.
Ping Li, Qin Zhang, Baosheng Shi, Liu Liu, Xiaoman Zhang, Jia Wang, Haihui Yi   +6 more
doaj   +1 more source

Whole-genome sequencing of a year-round fruiting jackfruit (Artocarpus heterophyllus Lam.) reveals high levels of single nucleotide variation

Frontiers in Plant Science, 2022
Jackfruit (Artocarpus heterophyllus Lam.) is the national fruit of Bangladesh and produces fruit in the summer season only. However, jackfruit is not commercially grown in Bangladesh because of an extremely high variation in fruit quality, short seasonal
Tofazzal Islam, Nadia Afroz, ChuShin Koh, M. Nazmul Hoque, Md. Jillur Rahman, Dipali Rani Gupta, Nur Uddin Mahmud, Abdullah Al Nahid, Rashedul Islam, Pankaj K. Bhowmik, Andrew G. Sharpe   +10 more
doaj   +1 more source

Parallel selection on ecologically relevant gene functions in the transcriptomes of highly diversifying salmonids

BMC Genomics, 2019
Background Salmonid fishes are characterised by a very high level of variation in trophic, ecological, physiological, and life history adaptations. Some salmonid taxa show exceptional potential for fast, within-lake diversification into morphologically ...
Kevin Schneider, Colin E. Adams, Kathryn R. Elmer   +2 more
doaj   +1 more source

Genomic insight into the scale specialization of the biological control agent Novius pumilus (Weise, 1892)

BMC Genomics, 2022
Background Members of the genus Novius Mulsant, 1846 (= Rodolia Mulsant, 1850) (Coleoptera, Coccinellidae), play important roles in the biological control of cotton cushion scale pests, especially those belonging to Icerya.
Xue-Fei Tang, Yu-Hao Huang, Hao-Sen Li, Pei-Tao Chen, Huan-Ying Yang, Yuan-Sen Liang, Xue-Yong Du, Zhen-Hua Liu, En-Feng Li, Yu-Chen Yang, Hong Pang   +10 more
doaj   +1 more source

Phylogenetic analyses for orthogroup-based classification of GDSL-type esterase/lipase (GELP) family in angiosperm representative species [PDF]

, 2021
Abstract GDSL-type esterase/lipase (GELP) enzymes have multiple functions in plants, spanning from developmental processes to the response to biotic and abiotic stresses. Genes encoding GELP belong to a large gene family with several tens to more than hundred members per angiosperm species.
Cenci Alberto, Concepción-Hernández Mairenys, Geert Angenon, Rouard Mathieu   +3 more
openaire   +1 more source

OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy [PDF]

Genome Biology, 2015
AbstractIdentifying homology relationships between sequences is fundamental to biological research. Here we provide a novel orthogroup inference algorithm called OrthoFinder that solves a previously undetected gene length bias in orthogroup inference, resulting in significant improvements in accuracy.
Emms, D, Kelly, S
openaire   +2 more sources

Orthogroup and phylotranscriptomic analyses identify transcription factors involved in the plant cold response: A case study of Arabidopsis BBX29

Plant Communications, 2023
C-repeat binding factors (CBFs) are well-known transcription factors (TFs) that regulate plant cold acclimation. RNA sequencing (RNA-seq) data from diverse plant species provide opportunities to identify other TFs involved in the cold response. However, this task is challenging because gene gain and loss has led to an intertwined community of co ...
Shuo Wang, Yirong Shen, Deyin Deng, Liangyu Guo, Yixian Zhang, Yuqi Nie, Yunfei Du, Xijuan Zhao, Xiaoxue Ye, Jianqin Huang, Huahong Huang, Jian-Kang Zhu, Wenwu Wu   +12 more
openaire   +2 more sources

Expansion and Evolutionary Patterns of Glycosyltransferase Family 8 in Gramineae Crop Genomes and Their Expression under Salt and Cold Stresses in Oryza sativa ssp. japonica

Biomolecules, 2019
Plant cell walls play a fundamental role in several ways, providing structural support for cells, resistance against pathogens and facilitating the communication between cells.
Weilong Kong, Ziyun Gong, Hua Zhong, Yue Zhang, Gangqing Zhao, Mayank Gautam, Xiaoxiao Deng, Chang Liu, Chenhao Zhang, Yangsheng Li   +9 more
doaj   +1 more source

oggmap: a Python package to extract gene ages per orthogroup and link them with single-cell RNA data

Bioinformatics, 2023
Abstract Summary For model species, single-cell RNA-based cell atlases are available. A good cell atlas includes all major stages in a species’ ontogeny, and soon, they will be standard even for nonmodel species.
Kristian K. Ullrich, Nikoleta E. Glynatsi   +1 more
openaire   +3 more sources

Comparative genomics of the extremophile Cryomyces antarcticus and other psychrophilic Dothideomycetes

Frontiers in Fungal Biology
Over a billion years of fungal evolution has enabled representatives of this kingdom to populate almost all parts of planet Earth and to adapt to some of its most uninhabitable environments including extremes of temperature, salinity, pH, water, light ...
Sandra V. Gomez-Gutierrrez, Wily R. Sic-Hernandez, Sajeet Haridas, Kurt LaButti, Joanne Eichenberger, Navneet Kaur, Anna Lipzen, Kerrie Barry, Stephen B. Goodwin, Michael Gribskov, Igor V. Grigoriev, Igor V. Grigoriev   +11 more
doaj   +1 more source