Results 71 to 80 of about 1,282 (176)

Genetic Diversity in Vitis vinifera L. Beyond the Reference Genome: Towards a Pangenomic Framework for Representation, Adaptation and Breeding

Horticulturae
The growing availability of genomic resources is changing how genetic diversity is studied in Vitis vinifera L. At the same time, it has become increasingly clear that a single reference genome cannot fully represent the complexity of a species ...
Francesca Fort, Leonor Deis, Qiying Lin-Yang, Joan Miquel Canals, Fernando Zamora   +4 more
doaj   +1 more source

A Pangenomic Approach to Improve Population Genetics Analysis and Reference Bias in Underrepresented Middle Eastern and Horn of Africa Populations

Biomolecules
Genomics plays a crucial role in addressing health disparities, yet most studies rely on the hg38 linear reference genome, limiting the potential of pangenomic approaches, particularly for underrepresented populations.
Adrien Oliva, Rachel Foare, Peter Campbell, Natalie A. Twine, Denis C. Bauer, Angad Singh Johar   +5 more
doaj   +1 more source

Biological and genomic resources for the cosmopolitan phytoplankton Bathycoccus: insights into genetic diversity and function of outlier chromosomes

The Plant Journal, Volume 126, Issue 5, June 2026.
SUMMARY Population‐scale genome sequencing has become essential for exploring genetic diversity and adaptation, particularly in land plants. In contrast, eukaryotic phytoplankton resources remain limited to model reference genomes or community‐level metagenomics, leaving a gap in understanding intraspecific variation and evolutionary processes.
Louis Dennu, Martine Devic, Janaina Rigonato, Angela Falciatore, Jean‐Claude Lozano, Valérie Vergé, Cédric Mariac, Nathalie Joli, Olivier Jaillon, François Sabot, François‐Yves Bouget   +10 more
wiley   +1 more source

A Draft Arab Pangenome Reference

, 2023
Abstract Human pangenomes provide a comprehensive portrayal of genetic diversity of humans, yet it lacks representation of Arab populations. We constructed the Arab Pangenome Reference (APR) from 43 individuals with diverse Arab ethnicities. Nuclear and mitochondrial pangenomes were constructed utilizing 35.52X High fidelity long reads and 53 ...
Nasna Nassir, Mohamed A. Almarri, Muhammad Kumail, Nesrin Mohamed, Bipin Balan, Shehzad Hanif, Maryam AlObathani, Bassam Jamalalail, Hanan Elsokary, Dasuki Kondaramage, Suhana Shiyas, Noor Kosaji, Dharana Satsangi, Madiha Hamdi Saif Abdelmotagali, Ahmad Abou Tayoun, Olfat Zuhair Salem Ahmed, Douaa Fathi Youssef, Hanan Al Suwaidi, Ammar Albanna, Stefan Du Plessis, Hamda Hassan Khansaheb, Alawi Alsheikh-Ali, Mohammed Uddin   +22 more
openaire   +1 more source

Assessment of the whole genome sequencing of Lactiplantibacillus plantarum 13-3 for elucidation of novel bacteriocin producing gene cluster and confirmation of its potential probiotic functionality and safety applications

CyTA - Journal of Food
Lactiplantibacillus plantarum is a probiotic starter culture that improves the flavor and nutritional content of fermented foods. It also shows potential in enhancing mucosal and systemic immunity, which contributes to overall health. We aimed to examine
Tariq Aziz, Muhammad Naveed, Muhammad Aqib Shabbir, Ayaz Ali Khan, Abid Sarwar, Taqweem Ul Haq, Yang Zhennai, Metab Alharbi, Abdullah F. Alasmari, Thamer H. Albekairi   +9 more
doaj   +1 more source

Genomics for next‐generation wheat breeding

The Plant Genome, Volume 19, Issue 2, June 2026.
Rajeev K. Varshney, Vanika Garg, Manuel Spannagl, Susanne Dreisigacker   +3 more
wiley   +1 more source

Lysinibacillus as Microbial Nanofactories: Genomic Mechanisms for Green Synthesis of Silver Nanoparticles (AgNPs)

Microbiology Research
The green synthesis of silver nanoparticles (AgNPs) by bacteria is a strategic route for sustainable nanobiotechnology; however, the genomic and biochemical mechanisms that make it possible remain poorly defined.
José Luis Aguirre-Noyola, Gustavo Cuaxinque-Flores, Jorge David Cadena-Zamudio, Marco A. Ramírez-Mosqueda, Lorena Jacqueline Gómez-Godínez, Juan Ramos-Garza   +5 more
doaj   +1 more source

Eukaryotic Pangenomes [PDF]

, 2020
AbstractThe first eukaryotes emerged from their prokaryotic ancestors more than 1.5 billion years ago and rapidly spread over the planet, first in the ocean, later on as land animals, plants, and fungi. Taking advantage of an expanding genome complexity and flexibility, they invaded almost all known ecological niches, adapting their body plan ...
openaire   +1 more source

Genome assembly and functional predation analysis of novel Bdellovibrio isolates from human gut microbiota

Frontiers in Microbiology
IntroductionPredatory bacteria of the Bdellovibrio and like organisms (BALOs) have long been postulated as living antimicrobials, yet their occurrence and ecological roles within human-associated microbiota have remained uncertain due to the absence of ...
Mario Romero-Rivera, Mario Romero-Rivera, Mario Romero-Rivera, Miguel D. Fernández-de-Bobadilla, María Beltrán, Rosa del Campo, Rosa del Campo, Rosa del Campo, José Avendaño-Ortiz, José Avendaño-Ortiz, Cristina Herencias, Cristina Herencias   +11 more
doaj   +1 more source

Evolutionary dynamics of type VI secretion systems in fruit fly-associated Enterobacter

Frontiers in Microbiology
Species in the genus Enterobacter are widely distributed and occupy diverse ecological niches. Although many species within this genus have been extensively isolated and characterized, their symbiotic associations with Tephritidae fruit flies remain ...
Naima Bel Mokhtar, Panagiota Stathopoulou, Elias Asimakis, Antonios Augustinos, Julieta Salgueiro, Malini Alleck, Preeaduth Sookar, Óscar Dembilio, Diego F. Segura, Diego F. Segura, George Tsiamis   +10 more
doaj   +1 more source