Results 31 to 40 of about 381,553 (352)

PDB-IHM: A System for Archiving and Dissemination of integrative structures [PDF]

Structural Dynamics
Structures of many large biomolecular assemblies are now being determined using integrative approaches, where information derived from multiple experimental and computational methods is combined to compute three-dimensional structures of macromolecular ...
Brinda Vallat
doaj   +1 more source

RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB

Bioinform., 2021
Motivation Membrane proteins are encoded by approximately one fifth of human genes but account for more than half of all US FDA approved drug targets. Thanks to new technological advances, the number of membrane proteins archived in the PDB is growing ...
Sebastian Bittrich, Yana Rose, J. Segura, Robert Lowe, J. Westbrook, Jose M. Duarte, S. Burley   +6 more
semanticscholar   +1 more source

SEQATOMS: a web tool for identifying missing regions in PDB in sequence context [PDF]

, 2008
With over 46 000 proteins, the Protein Data Bank (PDB) is the most important database with structural information of biological macromolecules. PDB files contain sequence and coordinate information. Residues present in the sequence can be absent from the
Heringa, J., Heringa, J.; id_orcid, Jack A. M. Leunissen, Jaap Heringa, Brandt, B.W.; id_orcid, Leunissen, J.A.M., Bernd W. Br, Brandt, B.W., B. W. Brandt, J. Heringa, J. A. M. Leunissen   +10 more
core   +2 more sources

Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students

Biomolecules, 2022
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), funded by the United States National Science Foundation, National Institutes of Health, and Department of Energy, supports structural biologists and Protein Data Bank (
Stephen K. Burley, Helen M. Berman, Jose M. Duarte, Zukang Feng, Justin W. Flatt, Brian P. Hudson, Robert Lowe, Ezra Peisach, Dennis W. Piehl, Yana Rose, Andrej Sali, Monica Sekharan, Chenghua Shao, Brinda Vallat, Maria Voigt, John D. Westbrook, Jasmine Y. Young, Christine Zardecki   +17 more
doaj   +1 more source

RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive

Journal of Molecular Biology, 2020
The US Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) serves many millions of unique users worldwide by delivering experimentally-determined 3D structures of biomolecules integrated with >40 external data resources via ...
Yana Rose, Jose M. Duarte, Robert Lowe, J. Segura, Chunxiao Bi, Charmi Bhikadiya, Li Chen, Alexander S. Rose, Sebastian Bittrich, S. Burley, J. Westbrook   +10 more
semanticscholar   +1 more source

PDBx/mmCIF Ecosystem: Foundation for FAIR Access to Macromolecular Structure Data [PDF]

Structural Dynamics
Protein Data Bank (PDB, wwpdb.org, rcsb.org) is the single global repository for three-dimensional structures of biological macromolecules determined experimentally. PDB has been a pioneer in promoting open science and FAIR data practices worldwide. Open
Brinda Vallat
doaj   +1 more source

The Effect of Power Distance Belief on the Evaluation of Experiential and Material Purchases

Behavioral Sciences, 2023
Depending on the level of power distance belief (PDB), individuals have different motivations to compare themselves with other people. This study suggests that the relationship between purchase type (material versus experiential) and purchase evaluation ...
Hongsub Kim, Yeosun Yoon, Byoungsoo Kim
doaj   +1 more source

PDBsum: Structural summaries of PDB entries

Protein Science, 2017
PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image‐based and include protein secondary structure, protein‐ligand and protein‐DNA interactions, PROCHECK analyses of ...
R. Laskowski, J. Jabłońska, L. Pravda, R. Vareková, J. Thornton   +4 more
semanticscholar   +1 more source

A perspective on the PDB’s impact on the field of glycobiology

Journal of Biological Chemistry, 2021
Structures deposited in the Protein Data Bank (PDB) facilitate our understanding of many biological processes including those that fall under the general category of glycobiology.
J. Prestegard
semanticscholar   +1 more source

Epigenetic DNA Methylation Signatures Associated With the Severity of Paget’s Disease of Bone

Frontiers in Cell and Developmental Biology, 2022
Background: Paget’s disease of bone (PDB) is characterized by focal areas of dysregulated bone turnover resulting in increased bone loss and abnormal bone formation with variable severity.
Ilhame Diboun, Ilhame Diboun, Sachin Wani, Stuart H. Ralston, Omar M. E. Albagha, Omar M. E. Albagha   +5 more
doaj   +1 more source