Results 51 to 60 of about 381,553 (352)

Comparative assessment of crystallographic and cryo-EM models in the Protein Data Bank. [PDF]

FEBS Open Bio
Raw data obtained by X‐ray crystallography or cryo‐EM result in experimental maps, ultimately fitted by atomic models. Although the physical principles are different, the final results can be viewed, compared, and evaluated in the same way. With cryogenic electron microscopy (cryo‐EM) on track to surpass X‐ray crystallography as the preferred method ...
Wlodawer A, Rubach P, Dauter Z, Dec W, Brzezinski D, Kulik M, Minor W, Jaskolski M.   +7 more
europepmc   +2 more sources

Fragment Molecular Orbital Based Interaction Analyses on COVID-19 Main Protease − Inhibitor N3 Complex (PDB ID: 6LU7)

Journal of Chemical Information and Modeling, 2020
The worldwide spread of COVID-19 (new coronavirus found in 2019) is an emergent issue to be tackled. In fact, a great amount of works in various fields have been made in a rather short period.
Ryo Hatada, K. Okuwaki, Y. Mochizuki, Yuma Handa, Kaori Fukuzawa, Y. Komeiji, Yoshio Okiyama, Shigenori Tanaka   +7 more
semanticscholar   +1 more source

PDB: Pervasive Debugging With Xen [PDF]

Fifth IEEE/ACM International Workshop on Grid Computing, 2005
Building distributed grid applications is notoriously difficult: the complex interactions between concurrently running processes, middleware, operating systems, underlying devices, and interconnecting networks can lead to unpredictable and difficult to analyze errors.
Alex Ho, Steven Hand 0001, Tim Harris 0001   +2 more
openaire   +2 more sources

Structural Modeling and Validation of Growth/Differentiation Factor 15 [NP_004855] Associated with Pregnancy Complication- Hyperemesis Gravidarum [PDF]

Journal of Krishna Institute of Medical Sciences University, 2020
Background: Hyperemesis Gravidarum (HG) is a common pregnancy complication that occurs in 0.3–2% of pregnancies. Growth/Differentiation Factor (GDF) 15 serum levels are abnormally high in patients associated with HG.
Rajneesh Prajapat, Suman Jain, Manish K Vaishnav, Sonal Sogani   +3 more
doaj  

rna-pdb-tools

, 2016
<p>rna-pdb-tools: is a library to analyze RNA structures and simulations</p>Get the latest version: https://github.com/mmagnus/rna-pdb ...
Magnus, Marcin (5268496), Magnus, Marcin
core   +1 more source

insights-from-the-pdb: May 2020 update

, 2020
Several nucleosome structures were missing because they don't have the word "nucleosome" in the PDB entry title (they have the acronym "NCP"). I fixed this so these structures are now counted.
Guillaume Gaullier
core   +1 more source

CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract) [PDF]

, 2010
Sommer B, Dingersen T, Schneider S, Rubert S, Gamroth C. CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract). In: Journal of Cheminformatics. Journal of Cheminformatics.
S Rubert, Schneider, S., Rubert, S., Rubert S, C Gamroth, Dingersen T, Schneider S, Gamroth C, Sommer Björn, T Dingersen, Dingersen, T., Björn Sommer, S Schneider, Sommer, Björn, Gamroth, C.   +14 more
core   +1 more source

Molecular effect of an OPTN common variant associated to Paget's disease of bone. [PDF]

PLoS ONE, 2018
Paget's disease of bone (PDB) is a chronic bone disorder and although genetic factors appear to play an important role in its pathogenesis, to date PDB causing mutations were identified only in the Sequestosome 1 (SQSTM1) gene at the PDB3 locus.
Iris A L Silva, Natércia Conceição, Édith Gagnon, Jacques P Brown, M Leonor Cancela, Laëtitia Michou   +5 more
doaj   +1 more source

Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank

Nucleic Acids Research
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, RCSB.org), the US Worldwide Protein Data Bank (wwPDB, wwPDB.org) data center for the global PDB archive, provides access to the PDB data via its RCSB.org research ...
Stephen K. Burley, Rusham Bhatt, Charmi Bhikadiya, Chunxiao Bi, Alison Biester, Pratyoy Biswas, Sebastian Bittrich, Santiago Blaumann, Ronald S. Brown, Henry Chao, Vivek Reddy Chithari, Paul A. Craig, G. Crichlow, Jose M. Duarte, S. Dutta, Zu-Kang Feng, J. Flatt, Sutapa Ghosh, David S. Goodsell, R. K. Green, Vladimir Guranovic, Jeremy Henry, B. Hudson, Mike Joy, J. Kaelber, Igor Khokhriakov, Jhih-Siang Lai, Catherine L. Lawson, Yu-He Liang, Douglas Myers-Turnbull, E. Peisach, Irina Persikova, Dennis W. Piehl, Aditya Pingale, Yana Rose, Jared Sagendorf, Andrej Šali, J. Segura, Monica R. Sekharan, Cheng-Hua Shao, James Smith, Michael Trumbull, Brinda K. Vallat, Maria Voigt, Ben M. Webb, S. Whetstone, Amy Wu-Wu, T. Xing, Jasmine Y. Young, Arthur O. Zalevsky, C. Zardecki   +50 more
semanticscholar   +1 more source

Studying and polishing the PDB's macromolecules [PDF]

Biopolymers, 2012
AbstractMacromolecular crystal structures are among the best of scientific data, providing detailed insight into these complex and biologically important molecules with a relatively low level of error and subjectivity. However, there are two notable problems with getting the most information from them.
Jane S, Richardson, David C, Richardson
openaire   +2 more sources