Results 111 to 120 of about 10,835 (252)

Topological Data Analysis for Computational Phenomics: Algorithms and Applications [PDF]

, 2020
Phenomics is an emerging branch of modern biology that uses high throughput phenotyping tools to capture multiple environmental and phenotypic traits, often at massive spatial and temporal scales. The resulting high dimensional data represents a treasure
Kamruzzaman, Md
core   +1 more source

Defining the progeria phenome

Aging
Progeroid disorders are a heterogenous group of rare and complex hereditary syndromes presenting with pleiotropic phenotypes associated with normal aging. Due to the large variation in clinical presentation the diseases pose a diagnostic challenge for clinicians which consequently restricts medical research.
Worm, Cecilie, Schambye, Maya Elena Ramirez, Mkrtchyan, Garik V., Veviorskiy, Alexander, Shneyderman, Anastasia, Ozerov, Ivan V., Zhavoronkov, Alex, Bakula, Daniela, Scheibye-Knudsen, Morten   +8 more
openaire   +3 more sources

Multiple ortho‐mosaicking software pipelines produce comparable imagery‐derived wheat phenotypes

The Plant Phenome Journal, Volume 9, Issue 1, December 2026.
Abstract Unmanned aerial systems (UAS) equipped with multispectral and RGB sensors offer valuable data for monitoring crop health and assessing disease severity. However, the wide range of available photogrammetric software complicates software selection for high‐throughput plant phenotyping.
Sanju Shrestha, Phillip D. Alderman, Grishma Ojha, Brett F. Carver   +3 more
wiley   +1 more source

Harnessing Agronomics through Genomics and Phenomics in Plant Breeding: A Review [PDF]

, 2021
Plant breeding primarily focuses on improving conventional agronomic traits, e.g. yield, quality, and resistance to biotic and abiotic stress; however, genetic improvement methods are being rapidly enhanced through genomics and phenomics. In the Genomics-
Schnable, James C., Jin, Xiuliang, Rutkoski, Jessica, Stich, Benjamin, Crossa, Jose, Murray, Seth C., Zhang, Zhiwu, Chen, Chunpeng James, Wang, Lizhi, Hayes, Ben J.   +9 more
core   +1 more source

Costs of photosynthesis and cellular remodeling in trophic transitions of the unicellular red alga Galdieria partita

Communications Biology
As in plastid differentiation in land plants, some unicellular algae reversibly remodel photosynthetic plastids into a colorless heterotrophic state (bleaching) in the presence of organic carbon sources.
Shota Yamashita, Shunsuke Hirooka, Takayuki Fujiwara, Baifeng Zhou, Fumi Yagisawa, Kei Tamashiro, Hiroki Murakami, Koichiro Awai, Shin-ya Miyagishima   +8 more
doaj   +1 more source

Day/Night Separation of Oxygenic Energy Metabolism and Nuclear DNA Replication in the Unicellular Red Alga Cyanidioschyzon merolae

mBio, 2019
The transition from G1 to S phase and subsequent nuclear DNA replication in the cells of many species of eukaryotic algae occur predominantly during the evening and night in the absence of photosynthesis; however, little is known about how day/night ...
Shin-ya Miyagishima, Atsuko Era, Tomohisa Hasunuma, Mami Matsuda, Shunsuke Hirooka, Nobuko Sumiya, Akihiko Kondo, Takayuki Fujiwara   +7 more
doaj   +1 more source

High-Throughput Phenomics

, 2015
Standard protocols are available in order to apply Phenotype MicroArray (PM) technology to characterize different groups of microorganisms. Nevertheless, there is the need to pay attention to several crucial steps in order to obtain high-quality and reproducible data from PM, such as the choice of the Dye mix, the type and concentration of the carbon ...
Carlo, Viti, Francesca, Decorosi, Emmanuela, Marchi, Marco, Galardini, Luciana, Giovannetti   +4 more
openaire   +3 more sources

PlantCV v4: Image analysis software for high‐throughput plant phenotyping

The Plant Phenome Journal, Volume 9, Issue 1, December 2026.
Abstract PlantCV is an open‐source Python project aimed at developing tools to address a range of image‐based, plant phenotyping questions. PlantCV has been used for more than 10 years to automate trait collection from image data, and the newest release, PlantCV version 4, continues to lower the barrier to entry for users without substantial coding ...
Haley Schuhl, Keely E. Brown, Hudanyun Sheng, Parag K. Bhatt, Jorge Gutierrez, Dominik Schneider, Anna L. Casto, Lucia Acosta‐Gamboa, Joe G. Ballenger, Fabio Barbero, Jackson Braley, Autumn M. Brown, Leonardo Chavez, Shannon Cunningham, Malinda Dilhara, Adam M. Dimech, Joseph G. Duenwald, Annika Fischer, Jared M. Gordon, Chloe Hendrikse, Gabriela L. Hernandez, John G. Hodge, Martina Huber, Brandon M. Hurr, Sanaz Jarolmasjed, Karina Medina Jimenez, Samuel Kenney, Grant Konkel, Alexander Kutschera, Sunita Lama, Matthew Lohbihler, Argelia Lorence, Collin Luebbert, Nathaniel Ly, Heather K. Manching, Annarita Marrano, Susan Meerdink, Nicholas M. Miklave, Pavan Mudrageda, Katherine M. Murphy, J. David Peery, Ronald Pierik, Seth Polydore, Caleb Robey, Tess Rogers, Tyler J. Schultz, Eliza Seigel, Dhiraj Srivastava, Stephan Summerer, Josh Sumner, Chong Teng, Adriane E. Thompson, Jose C. Tovar, Tim van Daalen, Mark Watson, John J. Wheeler, Mark C. Wilson, Kaitlyn R. Ying, Alina Zare, Yutai Zhou, Malia A. Gehan, Noah Fahlgren   +61 more
wiley   +1 more source

Flexible scientific data management for plant phenomics research [PDF]

, 2013
In this paper, we expand on the design and implementation of the Phenomics Ontology Driven Data repository [1] (PODD) with respect to the capture, storage and retrieval of data and metadata gen- erated at the High Resolution Plant Phenomics Centre ...
Gunasekera, Kutila, Ansell, Peter, Williams, Gareth, Furbank, Robert, Guo, Jianming, Sirault, Xavier, Benn, David   +6 more
core  

Hyppo-X: A Scalable Exploratory Framework for Analyzing Complex Phenomics Data [PDF]

, 2019
Phenomics is an emerging branch of modern biology that uses high throughput phenotyping tools to capture multiple environmental and phenotypic traits, often at massive spatial and temporal scales.
Kalyanaraman, Ananth, Schnable, Pat, Hey, Stefan, Kamruzzaman, Methun, Krishnamoorthy, Bala   +4 more
core   +1 more source