A Note on Encodings of Phylogenetic Networks of Bounded Level [PDF]
, 2009 Driven by the need for better models that allow one to shed light into the question how life's diversity has evolved, phylogenetic networks have now joined phylogenetic trees in the center of phylogenetics research. Like phylogenetic trees, such networks
A Batbedat +30 more
core +4 more sources
The Fair Proportion is a Shapley Value on phylogenetic networks too [PDF]
arXiv, 2018 The Fair Proportion of a species in a phylogenetic tree is a very simple measure that has been used to assess its value relative to the overall phylogenetic diversity represented by the tree.
Coronado, Tomás M. +2 more
core +2 more sources
A Perl Package and an Alignment Tool for Phylogenetic Networks [PDF]
arXiv, 2007 Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of evolutionary events acting at the population level, like recombination between genes, hybridization between lineages, and lateral gene transfer.
Cardona, Gabriel +2 more
core +2 more sources
Trinets encode tree-child and level-2 phylogenetic networks [PDF]
arXiv, 2012 Phylogenetic networks generalize evolutionary trees, and are commonly used to represent evolutionary histories of species that undergo reticulate evolutionary processes such as hybridization, recombination and lateral gene transfer.
Moulton, Vincent, van Iersel, Leo
core +1 more source
Detection and Phylogenetic Study of Peste des Petits Ruminants in Iran, 2019: Updated Data [PDF]
Archives of Razi Institute, 2021 Peste des Petits Ruminants (PPR) is caused by a morbillivirus from the Paramyxoviridae family and the infected animals, especially goats, that show clinical signs of necrotic stomatitis, enteritis, and pneumonia.
N Alidadi +5 more
doaj +1 more source
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
Nucleic Acids Res., 2021 The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone.
Ivica Letunic, P. Bork
semanticscholar +1 more source
Sequence Analysis of nrDNA ITS Region in Paşa and Şah Apple (Malus × domestica) Genotypes
Bulletin of University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca: Agriculture, 2023 In this study, phylogenetic analysis of Şah and Paşa apple genotypes was performed using nrDNA ITS sequences. After the plant leaves were brought to the laboratory, gDNAs were obtained by genomic DNA isolation method.
Emre SEVİNDİK, Zehra Tuğba MURATHAN
doaj +1 more source
Mitochondrial DNA. Part B. Resources, 2023 The species of Saussurea sagittifolia Y. S. Chen & S. R. Yi belongs to the family Asteraceae (Cardueae). The complete chloroplast genome of S. sagittifolia was assembled and annotated for the first time in this study. The complete chloroplast genome of S.
Xiao-Feng Liu +7 more
doaj +1 more source
Transcriptome Sequencing and Development of Novel Genic SSR Markers From Pistacia vera L.
Frontiers in Genetics, 2020 In this study, we aimed to develop novel genic simple sequence repeat (eSSR) markers and to study phylogenetic relationship among Pistacia species.
Harun Karcι +4 more
doaj +1 more source
Genetic variation and phylogenetic analysis of Indonesian indigenous catfish (baung fish) based on mitochondrial 12S rRNA gene [PDF]
Veterinary World, 2021 Background and Aim: Baung fish is an essential commodity in Indonesia; however, few studies have explored the genetic diversity of Indonesian catfish. Thus, this study aimed to analyze the genetic variation and phylogenetic relationships among Indonesian
Rini Widayanti +7 more
doaj +1 more source