Results 31 to 40 of about 850,464 (362)

Comparative analysis of medicinal plant Isodon rubescens and its common adulterants based on chloroplast genome sequencing

open access: yesFrontiers in Plant Science, 2022
Isodon rubescens (Hemsley) H. Hara is the source of Donglingcao under the monograph Rabdosiae Rubescentis Herba in Chinese Pharmacopoeia. In the local marketplace, this medicine can be accidentally contaminated, deliberately substituted, or mixed with ...
Zhongyu Zhou   +8 more
doaj   +1 more source

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses.

open access: yesMolecular biology and evolution, 2016
PartitionFinder 2 is a program for automatically selecting best-fit partitioning schemes and models of evolution for phylogenetic analyses. PartitionFinder 2 is substantially faster and more efficient than version 1, and incorporates many new methods and
R. Lanfear   +4 more
semanticscholar   +1 more source

Phylogenetic diversity and biodiversity indices on phylogenetic networks [PDF]

open access: yesMathematical Biosciences, 2018
In biodiversity conservation it is often necessary to prioritize the species to conserve. Existing approaches to prioritization, e.g. the Fair Proportion Index and the Shapley Value, are based on phylogenetic trees and rank species according to their contribution to overall phylogenetic diversity.
Kristina Wicke, Mareike Fischer
openaire   +4 more sources

Computational models for prediction of protein–protein interaction in rice and Magnaporthe grisea

open access: yesFrontiers in Plant Science, 2023
IntroductionPlant–microbe interactions play a vital role in the development of strategies to manage pathogen-induced destructive diseases that cause enormous crop losses every year. Rice blast is one of the severe diseases to rice Oryza sativa (O. sativa)
Biswajit Karan   +4 more
doaj   +1 more source

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

open access: yesNucleic Acids Res., 2016
Interactive Tree Of Life (http://itol.embl.de) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. It is freely available and open to everyone.
Ivica Letunic, P. Bork
semanticscholar   +1 more source

Comparison of avrD alleles from Pseudomonas syringae pv. glycinea

open access: yesMolecular Plant-Microbe Interactions, 1997
Avirulence gene D alleles resided on indigenous plasmids in races 0, 2, 3, 4, 5, and 6 of Pseudomonas syringae pv. glycinea (Psg), but the allele in race 1 appeared to be chromosomal.
Lisa Wolfson Keith   +3 more
doaj   +1 more source

Genetic Diversity and Relationship of Durian (Durio spp.) Germplasm Based on the Internal Transcribed Spacer (ITS) Region: In Silico Analysis

open access: yesPlanta Tropika: Jurnal Agrosains, 2023
Durian (Durio spp.) is a germplasm with a relatively high species diversity, with an estimated 27 species worldwide. However, the existence of several species has been threatened.
Dindin Hidayatul Mursyidin   +2 more
doaj   +1 more source

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

open access: yesBioinform., 2014
Motivation: Phylogenies are increasingly used in all fields of medical and biological research. Moreover, because of the next-generation sequencing revolution, datasets used for conducting phylogenetic analyses grow at an unprecedented pace.
A. Stamatakis
semanticscholar   +1 more source

Phylogenetic Factor Analysis [PDF]

open access: yesSystematic Biology, 2017
51 pages (42 main, 9 supplemental), 9 figures (5 main, 4 supplemental), 4 tables (2 main, 2 supplemental), submitted to Systematic ...
Tolkoff, Max R   +4 more
openaire   +6 more sources

Scalable Bayesian phylogenetics

open access: yesPhilosophical Transactions of the Royal Society B: Biological Sciences, 2022
Recent advances in Bayesian phylogenetics offer substantial computational savings to accommodate increased genomic sampling that challenges traditional inference methods. In this review, we begin with a brief summary of the Bayesian phylogenetic framework, and then conceptualize a variety of methods to improve posterior approximations via Markov chain ...
Alexander A. Fisher   +5 more
openaire   +4 more sources

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