MrBayes 3: Bayesian phylogenetic inference under mixed models
Bioinform., 2003 MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models.
F. Ronquist, J. Huelsenbeck
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Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Virus Evolution, 2018 The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package has become a primary tool for Bayesian phylogenetic and phylodynamic inference from genetic sequence data.
M. Suchard +5 more
semanticscholar +1 more source
New Phytologist, 2021 SummaryPolyploidy is a dominant feature of extant plant diversity. However, major research questions, including whether polyploidy is important to long‐term evolution or is just ‘evolutionary noise’, remain unresolved due to difficulties associated with the generation and analysis of data from polyploid lineages.
openaire +2 more sources
Phylogenetic structure and formation mechanism of shrub communities in arid and semiarid areas of the Mongolian Plateau [PDF]
, 2019 The mechanisms of species coexistence within a community have always been the focus in ecological research. Community phylogenetic structure reflects the relationship of historical processes, regional environments, and interactions between species, and ...
Dong, Lei +9 more
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W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
Nucleic Acids Res., 2016 This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis.
Jana Trifinopoulos +3 more
semanticscholar +1 more source
The space of ultrametric phylogenetic trees [PDF]
, 2016 The reliability of a phylogenetic inference method from genomic sequence data is ensured by its statistical consistency. Bayesian inference methods produce a sample of phylogenetic trees from the posterior distribution given sequence data.
Drummond, Alexei J., Gavryushkin, Alex
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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Systematic Biology, 2012 Since its introduction in 2001, MrBayes has grown in popularity as a software package for Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) methods. With this note, we announce the release of version 3.2, a major upgrade to the latest
F. Ronquist +9 more
semanticscholar +1 more source
Folding and unfolding phylogenetic trees and networks [PDF]
, 2015 Phylogenetic networks are rooted, labelled directed acyclic graphs which are commonly used to represent reticulate evolution. There is a close relationship between phylogenetic networks and multi-labelled trees (MUL-trees).
C Semple +17 more
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Revealing the complete mtDNA genome sequence of Cemani chicken () by using Nanopore sequencing analysis [PDF]
Animal BioscienceObjective This study aimed to identify, discover and explore the characteristics of the mtDNA genomes of Cemani chicken (Gallus gallus). Methods This study used gDNA of Cemani chicken isolated from liver tissue.
Sutopo Sutopo +8 more
doaj +1 more source
Diagnosis of bovine foot and mouth disease virus by real-time polymerase chain reaction and nucleotide sequencing from outbreak herd samples in Ilesha Baruba, Kwara state, Nigeria [PDF]
Veterinary World, 2014 Aim: Molecular diagnosis of bovine foot and mouth disease virus (FMDV) from outbreak herd in Bukaru-Rontuwa, Sinawu/Tumbunya ward of Ilesha Baruba, in Kwara state-Nigeria was conducted to establish the associated serotypes and disease control plan ...
Olatunde Hamza Olabode +2 more
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