Results 61 to 70 of about 1,477,998 (362)
phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)
bioRxiv, 2023 Phylogenetic comparative methods comprise the general endeavor of using an estimated phylogenetic tree (or set of trees) to make secondary inferences: about trait evolution, diversification dynamics, biogeography, community ecology, and a wide range of ...
L. Revell
semanticscholar +1 more source
When Do Phylogenetic Mixture Models Mimic Other Phylogenetic Models?
, 2012 Phylogenetic mixture models, in which the sites in sequences undergo different substitution processes along the same or different trees, allow the description of heterogeneous evolutionary processes.
Allman, Elizabeth S. +2 more
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Maximize Resolution or Minimize Error? Using Genotyping-By-Sequencing to Investigate the Recent Diversification of Helianthemum (Cistaceae) [PDF]
, 2019 A robust phylogenetic framework, in terms of extensive geographical and taxonomic sampling, well-resolved species relationships and high certainty of tree topologies and branch length estimations, is critical in the study of macroevolutionary patterns ...
Aparicio Martínez, Abelardo +7 more
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Frontiers in Veterinary ScienceFleas serve as hosts to a diverse array of pathogens, which present significant medical and veterinary concerns for human and livestock health. The mitochondrial genome (mtDNA) has long been regarded as a classical model in biogenetics and species ...
Mingna Duan +9 more
doaj +1 more source
Philosophical Transactions of the Royal Society of London. B, Biological Sciences, 1989 A new statistical method called the phylogenetic regression is proposed that applies multiple regression techniques to cross-species data. It allows continuous and categorical variables to be tested for and controlled for. The new method is valid despite the problem that phylogenetically close species tend to be similar, and is designed to be used when
openaire +3 more sources
CHARACTER ASSESSMENT, GENUS LEVEL BOUNDARIES, AND PHYLOGENETIC ANALYSES OF THE FAMILY RHACOPHORIDAE:: A REVIEW AND PRESENT DAY STATUS [PDF]
, 2000 The first comprehensive phylogenetic analysis of the family Rhacophoridae was conducted by Liem (1970) scoring 81 species for 36 morphological characters. Channing (1989), in a reanalysis of Liem’s study, produced a phylogenetic hypothesis different from
Drewes, Robert C., Wilkinson, Jeffery A.
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Frontiers in Genetics, 2022 Species within the Genus Catalpa are mostly semievergreen or deciduous trees with opposite or whorled leaves. C. bungei, C. fargesii f. duclouxii and C. fargesii are sources of traditional precious wood in China, known as the “kings of wood”.
Feng Li +9 more
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The Phylogenetic Likelihood Library [PDF]
Systematic Biology, 2014 We introduce the Phylogenetic Likelihood Library (PLL), a highly optimized application programming interface for developing likelihood-based phylogenetic inference and postanalysis software. The PLL implements appropriate data structures and functions that allow users to quickly implement common, error-prone, and labor-intensive tasks, such as ...
Flouri, T. +7 more
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Six simple guidelines for introducing new genera of fungi [PDF]
, 2015 We formulate five guidelines for introducing new genera, plus one recommendation how to publish the results of scientific research. We recommend that reviewers and editors adhere to these guidelines.
Ammirati, Joe +16 more
core +2 more sources
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Bioinform., 2006 UNLABELLED RAxML-VI-HPC (randomized axelerated maximum likelihood for high performance computing) is a sequential and parallel program for inference of large phylogenies with maximum likelihood (ML).
A. Stamatakis
semanticscholar +1 more source