Results 11 to 20 of about 23,479,758 (331)
Вестник Российского государственного медицинского университета, 2020 Twenty-eight published FAdVs hexon (Table 1) and fiber (Table 2) gene sequences were obtained from GenBank. Another two reference strains from different genus avian adenovirus was used which are Duck adenovirus (Atadenovirus) and Turkey adenovirus ...
Joachim Nwezeobi
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phangorn: phylogenetic analysis in R [PDF]
Bioinformatics, 2010 AbstractSummary: phangorn is a package for phylogenetic reconstruction and analysis in the R language. Previously it was only possible to estimate phylogenetic trees with distance methods in R. phangorn, now offers the possibility of reconstructing phylogenies with distance based methods, maximum parsimony or maximum likelihood (ML) and performing ...
Klaus P. Schliep
openaire +3 more sources
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes [PDF]
Molecular biology and evolution, 2021 Methods for evaluating the quality of genomic and metagenomic data are essential to aid genome assembly procedures and to correctly interpret the results of subsequent analyses.
M. Manni +4 more
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Bioinform., 2014 Motivation: Phylogenies are increasingly used in all fields of medical and biological research. Moreover, because of the next-generation sequencing revolution, datasets used for conducting phylogenetic analyses grow at an unprecedented pace.
A. Stamatakis
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Nature Communications, 2020 Microbial genomes are available at an ever-increasing pace, as cultivation and sequencing become cheaper and obtaining metagenome-assembled genomes (MAGs) becomes more effective.
F. Asnicar +17 more
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OrthoFinder: phylogenetic orthology inference for comparative genomics
Genome Biology, 2019 Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted gene trees, gene duplication events, the rooted species tree, and comparative
David M. Emms, S. Kelly
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Phylogenetic Analysis of Lednice Orthobunyavirus
Microorganisms, 2019 Lednice virus (LEDV) has been detected in Culex modestus mosquitoes in several European countries within the last six decades. In this study, phylogenetic analyses of the complete genome segments confirm that LEDV belongs to the Turlock orthobunyavirus ...
Rebeka Lucijana Berčič +7 more
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Information and Phylogenetic Systematic Analysis
Information, 2015 Information in phylogenetic systematic analysis has been conceptualized, defined, quantified, and used differently by different authors. In this paper, we start with the Shannon Uncertainty Measure information measure I, applying it to cladograms ...
Walter Craig, Jonathon Stone
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Characterization of the complete chloroplast genome of a medicinal plant, Portulaca oleracea
Mitochondrial DNA. Part B. Resources, 2020 Portulaca oleracea is an important and widely distributed medicinal and edible plant, which has great economic value in the medical and food industries in the whole world. The complete chloroplast genome of Portulaca oleracea was found to possess a total
Chen Li +4 more
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W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
Nucleic Acids Res., 2016 This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis.
Jana Trifinopoulos +3 more
semanticscholar +1 more source