Genomic characterization and phylogenetic analysis of SARS‐COV‐2 in Italy [PDF]
medRxiv, 2020 This report describes the isolation, the molecular characterization and the phylogenetic analysis of the first three complete genomes of SARS-CoV-2 isolated from three patients involved in the first outbreak of COVID-19 in Lombardy, Italy.
Gianguglielmo Zehender +12 more
openalex +2 more sources
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes [PDF]
Molecular biology and evolution, 2021 Methods for evaluating the quality of genomic and metagenomic data are essential to aid genome assembly procedures and to correctly interpret the results of subsequent analyses.
M. Manni +4 more
semanticscholar +1 more source
Вестник Российского государственного медицинского университета, 2020 Twenty-eight published FAdVs hexon (Table 1) and fiber (Table 2) gene sequences were obtained from GenBank. Another two reference strains from different genus avian adenovirus was used which are Duck adenovirus (Atadenovirus) and Turkey adenovirus ...
Joachim Nwezeobi
semanticscholar +3 more sources
A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem [PDF]
, 2012 A nearly complete genome sequence of Candidatus ‘Acetothermum autotrophicum’, a presently uncultivated bacterium in candidate division OP1, was revealed by metagenomic analysis of a subsurface thermophilic microbial mat community.
A Stamatakis +69 more
core +8 more sources
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Bioinform., 2014 Motivation: Phylogenies are increasingly used in all fields of medical and biological research. Moreover, because of the next-generation sequencing revolution, datasets used for conducting phylogenetic analyses grow at an unprecedented pace.
A. Stamatakis
semanticscholar +1 more source
Nature Communications, 2020 Microbial genomes are available at an ever-increasing pace, as cultivation and sequencing become cheaper and obtaining metagenome-assembled genomes (MAGs) becomes more effective.
F. Asnicar +17 more
semanticscholar +1 more source
CHARACTER ASSESSMENT, GENUS LEVEL BOUNDARIES, AND PHYLOGENETIC ANALYSES OF THE FAMILY RHACOPHORIDAE:: A REVIEW AND PRESENT DAY STATUS [PDF]
, 2000 The first comprehensive phylogenetic analysis of the family Rhacophoridae was conducted by Liem (1970) scoring 81 species for 36 morphological characters. Channing (1989), in a reanalysis of Liem’s study, produced a phylogenetic hypothesis different from
Drewes, Robert C., Wilkinson, Jeffery A.
core +2 more sources
Phylogenetic inferences of Atelinae (Platyrrhini) based on multi-directional chromosome painting in Brachyteles arachnoides, Ateles paniscus paniscus and Ateles b. marginatus [PDF]
, 2005 We performed multi-directional chromosome painting in a comparative cytogenetic study of the three Atelinae species Brachyteles arachnoides, Ateles paniscus paniscus and Ateles belzebuth marginatus, in order to reconstruct phylogenetic relationships ...
C. Nagamachi +17 more
core +1 more source
OrthoFinder: phylogenetic orthology inference for comparative genomics
Genome Biology, 2019 Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted gene trees, gene duplication events, the rooted species tree, and comparative
David M. Emms, S. Kelly
semanticscholar +1 more source
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
Nucleic Acids Res., 2016 This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis.
Jana Trifinopoulos +3 more
semanticscholar +1 more source