Jumpstarting phylogenetic analysis
International Journal of Bioinformatics Research and Applications, 2006 Phylogenetic analysis is a central tool in studies of comparative genomics. When a new region of DNA is isolated and sequenced, researchers are often forced to throw away months of computation on an existing phylogeny of homologous sequences in order to incorporate this new sequence.
Jesse Mecham +5 more
openaire +3 more sources
Phylogenomic analysis reveals extensive phylogenetic mosaicism in the Human GPCR Superfamily [PDF]
, 2007 A novel high throughput phylogenomic analysis (HTP) was applied to the rhodopsin G-protein coupled receptor (GPCR) family. Instances of phylogenetic mosaicism between receptors were found to be frequent, often as instances of correlated mosaicism and ...
Allaby, Robin G. +3 more
core +1 more source
Towards a Taxonomically Intelligent Phylogenetic Database [PDF]
, 2007 This note outlines some of the key intellectual obstacles that stand in the way of creating a usable phylogenetic database. These challenges include the need to accommodate multiple taxonomic names and classifications, and the need for tools to query ...
Roderic Page
core +1 more source
Morphometric And Phylogenetic Analysis of Goby Fish (Glossogobyus giuris) In The Three Integrated Lakes On South Sulawesi, Indonesia. [PDF]
, 2022 The white goby fish, Glossogobius giuris is a germplasm in Tempe Lake that is decreasing due to the genetic barrier. This becomes a threat for its population in the three integrated lakes, namely Sidenreng, Lapompakka, and Tempe.
Sapto Andriyono, ,- +6 more
core +1 more source
Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure [PDF]
, 2013 Background: Most phylogeny analysis methods based on molecular sequences use multiple alignment where the quality of the alignment, which is dependent on the alignment parameters, determines the accuracy of the resulting trees.
Sırrı Yüzbaşıoğlu +25 more
core +1 more source
Predicting functional gene links from phylogenetic-statistical analyses of whole genomes [PDF]
, 2005 An important element of the developing field of proteomics is to understand protein-protein interactions and other functional links amongst genes. Across-species correlation methods for detecting functional links work on the premise that functionally ...
Barker, Daniel +7 more
core +2 more sources
Heliyon, 2023 The present research aimed to evaluate the diversity of all monkeypox virus strains with a special focus on recently isolated ones by a comprehensive phylogenetic analysis of all available sequences, based on the concatenate of four viral genes.
Mária Benkő +2 more
doaj +1 more source
The role of edaphic environment and climate in structuring phylogenetic pattern in seasonally dry tropical plant communities [PDF]
, 2015 This study was made possible through the kind financial support of the São Paulo Research Foundation - http://fapesp.br/en (Fundação de Amparo à Pesquisa do Estado de São Paulo - Fapesp 2013/15280-9).Seasonally dry tropical plant formations (SDTF) are ...
Marcelo Freire Moro +23 more
core +1 more source
Phylogenetic Codivergence Supports Coevolution of Mimetic Heliconius Butterflies [PDF]
, 2012 The unpalatable and warning-patterned butterflies _Heliconius erato_ and _Heliconius melpomene_ provide the best studied example of mutualistic Müllerian mimicry, thought – but rarely demonstrated – to promote coevolution.
Michael Charleston +3 more
core +2 more sources
PHYTOCHEMICAL AND PHYLOGENETIC ANALYSIS OF
Química Nova, 2015 This paper describes the correlation between the phenolic composition and the molecular phylogenetic reconstruction of five Spondias species (Anacardiaceae). Two of these species (S.
Cristiane Pereira +5 more
doaj +1 more source