Phylogenetic Analysis of Gene Expression [PDF]
Integrative and Comparative Biology, 2013 14 pages, 4 ...
Dunn, Casey W., Luo, Xi, Wu, Zhijin
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A Bayesian phylogenetic hidden Markov model for B cell receptor sequence analysis. [PDF]
, 2019 The human body generates a diverse set of high affinity antibodies, the soluble form of B cell receptors (BCRs), that bind to and neutralize invading pathogens.
Dhar, Amrit +3 more
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Jumpstarting phylogenetic analysis
International Journal of Bioinformatics Research and Applications, 2006 Phylogenetic analysis is a central tool in studies of comparative genomics. When a new region of DNA is isolated and sequenced, researchers are often forced to throw away months of computation on an existing phylogeny of homologous sequences in order to incorporate this new sequence.
Jesse Mecham +5 more
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Phylogenetic Analysis of Lednice Orthobunyavirus
Microorganisms, 2019 Lednice virus (LEDV) has been detected in Culex modestus mosquitoes in several European countries within the last six decades. In this study, phylogenetic analyses of the complete genome segments confirm that LEDV belongs to the Turlock orthobunyavirus ...
Rebeka Lucijana Berčič +7 more
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Mitochondrial DNA. Part B. Resources, 2022 In this study, we sequenced the complete mitochondrial genome (mitogenome) of Cerogria popularis Borchmann, 1936 based on the Illumina platform. The circular DNA molecule is 16,175 bp in size, including the 37 typical animal mitochondrial genes and a non-
Tongtong Liu +3 more
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Phylogenetic inferences of Atelinae (Platyrrhini) based on multi-directional chromosome painting in Brachyteles arachnoides, Ateles paniscus paniscus and Ateles b. marginatus [PDF]
, 2005 We performed multi-directional chromosome painting in a comparative cytogenetic study of the three Atelinae species Brachyteles arachnoides, Ateles paniscus paniscus and Ateles belzebuth marginatus, in order to reconstruct phylogenetic relationships ...
C. Nagamachi +17 more
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Characterization of the complete chloroplast genome of a medicinal plant, Portulaca oleracea
Mitochondrial DNA. Part B. Resources, 2020 Portulaca oleracea is an important and widely distributed medicinal and edible plant, which has great economic value in the medical and food industries in the whole world. The complete chloroplast genome of Portulaca oleracea was found to possess a total
Chen Li +4 more
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Phylogenetic analysis of eIF4E-family members
BMC Evolutionary Biology, 2005 Background Translation initiation in eukaryotes involves the recruitment of mRNA to the ribosome which is controlled by the translation factor eIF4E. eIF4E binds to the 5'-m7Gppp cap-structure of mRNA.
Maeder Dennis L +3 more
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Phylogeny of Prokaryotes and Chloroplasts Revealed by a Simple Composition Approach on All Protein Sequences from Complete Genomes Without Sequence Alignment [PDF]
, 2005 The complete genomes of living organisms have provided much information on their phylogenetic relationships. Similarly, the complete genomes of chloroplasts have helped to resolve the evolution of this organelle in photosynthetic eukaryotes.
C Lemieux +50 more
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rbrothers: R Package for Bayesian Multiple Change-Point Recombination Detection. [PDF]
, 2013 Phylogenetic recombination detection is a fundamental task in bioinformatics and evolutionary biology. Most of the computational tools developed to attack this important problem are not integrated into the growing suite of R packages for statistical ...
Chattopadhyay, Sujay +3 more
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