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Evolution, 2008
Meta-analysis is a powerful statistical technique that combines the results of independent studies to identify general trends. When the species under examination are not independent however, it is also necessary to incorporate phylogenetic information into the analysis.
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Meta-analysis is a powerful statistical technique that combines the results of independent studies to identify general trends. When the species under examination are not independent however, it is also necessary to incorporate phylogenetic information into the analysis.
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Phylogenetic Survival Analysis
Going back in time through a phylogenetic tree makes it possible to evaluate ancestral genomes and assess their potential to acquire key polymorphisms of interest over evolutionary time. Knowledge of this kind may allow for the emergence of key traits to be predicted and pre-empted from currently circulating strains in the future.Torres Ortiz, Arturo, Grandjean, Louis
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Phylogenetic analysis ofUlmaceae
Plant Systematics and Evolution, 1996A phylogenetic analysis of theUlmaceae, Cannabaceae, Barbeyaceae, andBroussonetia of theMoraceae produced nine equally parsimonious trees with 127 steps. TheUlmoideae (Ulmaceae, sensuGrudzinskaya) are a monophyletic group and distinct from theCeltidoideae. The genusAmpelocera occupies an isolated taxonomic position among the celtidoids.
Michael S. Zavada, Muyeol Kim
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Microcomputers and Phylogenetic Analysis
Science, 1986The programs discussed above show how microcomputers have added to the arsenal of systematic biologists. This is a rapidly developing field, and there are no doubt major changes on the horizon. Swofford is working on a new version of PAUP that will have some of the interactive features of MacClade (and will not require a math coprocessor) and there are
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Phylogenetic analysis of haloalkane dehalogenases
Proteins: Structure, Function, and Bioinformatics, 2007AbstractHaloalkane dehalogenases (HLDs) are enzymes that catalyze the cleavage of carbon–halogen bonds by a hydrolytic mechanism. Although comparative biochemical analyses have been published, no classification system has been proposed for HLDs, to date, that reconciles their phylogenetic and functional relationships.
Eva, Chovancová +3 more
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Combining data in phylogenetic analysis
Trends in Ecology & Evolution, 1996Systematists have access to multiple sources of character information in phylogenetic analysis. For example, it is not unusual to have nucleotide sequences from several different genes, or to have molecular and morphological data. How should diverse data be analyzed in phylogenetic analysis?
J P, Huelsenbeck +2 more
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A phylogenetic analysis of Legionella
Archives of Microbiology, 1983Four species of Legionella, L. pneumophila NCTC 11192, L. bozemanii NCTC 11368, L. micdadei NCTC 11371 and L. jordanis ATCC 33623 have been characterized by oligonucleotide cataloguing of their 16S ribosomal RNA. All four species are phylogenetically closely related, while no specific relationship could be detected with any other group of organisms ...
W, Ludwig, E, Stackebrandt
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Phylogenetic analysis of anthropoid relationships
Journal of Human Evolution, 1998The relationships of anthropoids to other primates are currently debated, as are the relationships among early fossil anthropoids and crown anthropoids. To resolve these issues, data on 291 morphological characters were collected for 57 taxa of living and fossil primates and analyzed using PAUP and MacClade.
C, Ross, B, Williams, R F, Kay
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Phylogenetic Analysis of HeterothallicNeurosporaSpecies
Fungal Genetics and Biology, 1997We examined the phylogenetic relationships among five heterothallic species of Neurospora using restriction fragment polymorphisms derived from cosmid probes and sequence data from the upstream regions of two genes, al-1 and frq. Distance, maximum likelihood, and parsimony trees derived from the data support the hypothesis that strains assigned to N ...
M P, Skupski, D A, Jackson, D O, Natvig
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Phylogenetic Analysis of Adenovirus Sequences
2007Members of the family Adenoviridae have been isolated from a large variety of hosts, including representatives from every major vertebrate class from fish to mammals. The high prevalence, together with the fairly conserved organization of the central part of their genomes, make the adenoviruses one of (if not the) best models for studying viral ...
Balázs, Harrach, Mária, Benko
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