Results 11 to 20 of about 375,692 (274)

Software Choice and Sequencing Coverage Can Impact Plastid Genome Assembly–A Case Study in the Narrow Endemic Calligonum bakuense

Frontiers in Plant Science, 2022
Most plastid genome sequences are assembled from short-read whole-genome sequencing data, yet the impact that sequencing coverage and the choice of assembly software can have on the accuracy of the resulting assemblies is poorly understood. In this study,
Eka Giorgashvili, Katja Reichel, Calvinna Caswara, Vuqar Kerimov, Thomas Borsch, Thomas Borsch, Michael Gruenstaeudl   +6 more
doaj   +1 more source

Novel Gene Rearrangement Pattern in Pachycrepoideus vindemmiae Mitochondrial Genome: New Gene Order in Pteromalidae (Hymenoptera: Chalcidoidea)

Animals, 2023
The mitochondrial genomes of Muscidifurax similadanacus, M. sinesensilla, Nasonia vitripennis, and Pachycrepoideus vindemmiae were sequenced to better understand the structural evolution of Pteromalidae mitogenomes.
Yixin Huang, Yuanhan Yang, Liqing Qi, Haoyuan Hu, Jean-Yves Rasplus, Xu Wang   +5 more
doaj   +1 more source

The first complete mitogenome of Cervus canadensis nannodes (Merriam, 1905)

Mitochondrial DNA. Part B. Resources, 2020
Cervus canadensis nannodes (Merriam, 1905) is one of the subspecies of elk distributed only in California, USA. We completed the first mitogenome of C. canadensis nannodes. Its length is 16,428 bp, which is in middle among 24 available Cervus mitogenomes.
Hyo-Jin Kim, Ji-Yong Hwang, Kyung-Je Park, Hoo-Chang Park, Hae-Eun Kang, Jongsun Park, Hyun-Joo Sohn   +6 more
doaj   +1 more source

Characterization of the complete mitochondrial genome of blacktip shark Carcharhinus limbatus (Carcharhiniformes: Carcharhinidae)

Mitochondrial DNA. Part B. Resources, 2022
In this study, we aimed to determine the complete mitochondrial genome of blacktip shark Carcharhinus limbatus. The mitochondrial genome was 16,705 bp in length, including 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a control region ...
Xiaolin Huang, Zanhu Zhou, Tinghe Lai, Binyuan He, Demin Zhang   +4 more
doaj   +1 more source

The Complete Mitogenomes of Three Grasshopper Species with Special Notes on the Phylogenetic Positions of Some Related Genera

Insects, 2023
Clarifying phylogenetic position and reconstructing robust phylogeny of groups using various evidences are an eternal theme for taxonomy and systematics.
Chulin Zhang, Benyong Mao, Hanqiang Wang, Li Dai, Yuan Huang, Zhilin Chen, Jianhua Huang   +6 more
doaj   +1 more source

Phylogenetic and functional analysis of the Cation Diffusion Facilitator (CDF) family: improved signature and prediction of substrate specificity [PDF]

, 2007
BACKGROUND The Cation Diffusion Facilitator (CDF) family is a ubiquitous family of heavy metal transporters. Much interest in this family has focused on implications for human health and bioremediation.
Blaudez, D., Chalot, M., Jeandroz, S., Montanini, B., Sanders, D.   +4 more
core   +3 more sources

Complete genome sequence and taxonomic position of anguillid herpesvirus 1 [PDF]

, 2010
Eel herpesvirus or anguillid herpesvirus 1 (AngHV1) frequently causes disease in freshwater eels. The complete genome sequence of AngHV1 and its taxonomic position within the family Alloherpesviridae were determined. Shotgun sequencing revealed a 249 kbp
Abma-Henkens, M.H.C., Beurden, S.J., van, Bossers, A., Engelsma, M.Y., Haenen, O.L.M., Peeters, B.P.H., Peters, S.A., Rottier, P.J.M., Voorbergen-Laarman, H.A.   +8 more
core   +6 more sources

Molecular studies on intraspecific diversity and phylogenetic position of Coniothyrium minitans [PDF]

, 2001
Simple sequence repeat (SSR)±PCR amplification using a microsatellite primer (GACA)% and ribosomal RNA gene sequencing were used to examine the intraspecific diversity in the mycoparasite Coniothyrium minitans based on 48 strains, representing eight ...
Goldstein, Alan L., Muthumeenakshi, S., Stewart, Alison, Whipps, J. M.   +3 more
core   +1 more source

Origin and evolution of the slime molds (Mycetozoa) [PDF]

, 1997
The Mycetozoa include the cellular (dictyostelid), acellular (myxogastrid), and protostelid slime molds. However, available molecular data are in disagreement on both the monophyly and phylogenetic position of the group.
Baldauf, S.L., Doolittle, W.F.
core   +2 more sources

Comparative Analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans Protein Interaction Network [PDF]

, 2005
Protein interaction networks aim to summarize the complex interplay of proteins in an organism. Early studies suggested that the position of a protein in the network determines its evolutionary rate but there has been considerable disagreement as to what
Abbott, James, Agrafioti, Ino, Butcher, Sarah, Huntley, Derek, Stumpf, Michael P. H., Swire, Jonathan   +5 more
core   +5 more sources