Results 131 to 140 of about 2,043,845 (347)
Influence of tree shape and evolutionary time-scale on phylogenetic diversity metrics.
Ecography, 2016 During the last decades, describing, analysing and understanding the phylogenetic structure of species assemblages has been a central theme in both community ecology and macro-ecology.
Florent Mazel +6 more
semanticscholar +1 more source
Inhibition of RNase to Attenuate Fungal‐Manipulated Rhizosphere Microbiome and Diseases
Advanced Science, EarlyView.Fusarium graminearum uses its virulence effector Fg12, a fungal RNase, to manipulate the host rhizosphere microbiome and promote infection. Guanosine monophosphate (GMP) blocks Fg12's RNase activity. This reveals a key pathogen‐microbiota interaction mechanism and proposes GMP as a targeted strategy to disarm this core fungal effector, offering a ...
Bo Yang +13 more
wiley +1 more source
How can Sequence Alignment Method Affect the Phylogenetic Relationship Results?
Scientific Papers Animal Science and Biotechnologies, 2023 Sequence alignment is a fundamental step before analysing the phylogenetic relationships between organisms. The effect of the alignment method on the phylogenetic relationship results has not been well studied.
Hossam F. Abou-Shaara
doaj
PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees
BMC Bioinformatics, 2009 Background To effectively apply evolutionary concepts in genome-scale studies, large numbers of phylogenetic trees have to be automatically analysed, at a level approaching human expertise.
Pontarotti Pierre +2 more
doaj +1 more source
Structural Variations Associated with Adaptation and Coat Color in Qinghai‐Tibetan Plateau Cattle
Advanced Science, EarlyView.This study reveals the landscape of structural variants in Qinghai‐Tibetan Plateau cattle through long‐read sequencing. Discoveries include metabolic and oxygen‐regulation gene variants, along with a 2‐Mb KIT‐containing inversion and translocations responsible for cattle gray coat. These findings highlight the significant role of structural variants in
Xiaoting Xia +39 more
wiley +1 more source
Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction
PLoS ONE, 2017 Phylogenetic trees inferred using commonly-used models of sequence evolution are unrooted, but the root position matters both for interpretation and downstream applications.
U. Mai, Erfan Sayyari, S. Mirarab
semanticscholar +1 more source
Advanced Science, EarlyView.This study deciphers maternal‐driven microbial transmission in pigs using a deep learning model (maternal–offspring microbial transmission model), identifying Christensenellaceae R‐7 group as a key transmitted taxon. Filtered galacto‐oligosaccharides‐targeted Christensenellaceae R‐7 group alters offspring microbial functions via maternal ...
Haibo Shen +9 more
wiley +1 more source
Geometry of the Space of Phylogenetic Trees
Advances in Applied Mathematics, 2001 zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Billera, Louis J. +2 more
openaire +2 more sources
Estimating the Effective Sample Size of Tree Topologies from Bayesian Phylogenetic Analyses
Genome Biology and Evolution, 2016 Bayesian phylogenetic analyses estimate posterior distributions of phylogenetic tree topologies and other parameters using Markov chain Monte Carlo (MCMC) methods.
R. Lanfear, Xia Hua, D. Warren
semanticscholar +1 more source
Advanced Science, EarlyView.The structure and assembly principles of a two‐component encapsulin nanocompartment shell are reported. The two‐component protein compartment self‐assembles from two distinct HK97‐fold shell proteins into a pseudo‐icosahedral protein shell with variable composition and irregular tiling.
Cassandra A. Dutcher +2 more
wiley +1 more source