Results 31 to 40 of about 2,113,711 (315)
OrthoFinder: phylogenetic orthology inference for comparative genomics
Genome Biology, 2019 Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted gene trees, gene duplication events, the rooted species tree, and comparative
David M. Emms, S. Kelly
semanticscholar +1 more source
A New Phylogenetic Inference Based on Genetic Attribute Reduction for Morphological Data
Entropy, 2019 To address the instability of phylogenetic trees in morphological datasets caused by missing values, we present a phylogenetic inference method based on a concept decision tree (CDT) in conjunction with attribute reduction.
Jun Feng +5 more
doaj +1 more source
Brazilian Journal of Biology, 2021 This study aimed to identify the phylogenetic similarities among the muntjac (Muntiacus spp.). The phylogenetic similarities among seven major muntjac species were studied by comparing the nucleotide sequence of 16s rRNA and cytochrome b genome ...
B. M. Khan +7 more
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Phylogenetic impoverishment of Amazonian tree communities in an experimentally fragmented forest landscape. [PDF]
PLoS ONE, 2014 Amazonian rainforests sustain some of the richest tree communities on Earth, but their ecological and evolutionary responses to human threats remain poorly known.
Bráulio A Santos +6 more
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Classes of tree-based networks
Visual Computing for Industry, Biomedicine, and Art, 2020 Recently, so-called tree-based phylogenetic networks have attracted considerable attention. These networks can be constructed from a phylogenetic tree, called the base tree, by adding additional edges.
Mareike Fischer +4 more
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Six simple guidelines for introducing new genera of fungi [PDF]
, 2015 We formulate five guidelines for introducing new genera, plus one recommendation how to publish the results of scientific research. We recommend that reviewers and editors adhere to these guidelines.
Ammirati, Joe +16 more
core +2 more sources
PLoS ONE, 2015 Investigating patterns of phylogenetic structure across different life stages of tree species in forests is crucial to understanding forest community assembly, and investigating forest gap influence on the phylogenetic structure of forest regeneration is
Yi Jin, Hong Qian, Mingjian Yu
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ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates
Nature Methods, 2017 Model-based molecular phylogenetics plays an important role in comparisons of genomic data, and model selection is a key step in all such analyses. We present ModelFinder, a fast model-selection method that greatly improves the accuracy of phylogenetic ...
S. Kalyaanamoorthy +4 more
semanticscholar +1 more source
Molecular biology and evolution, 2019 Phylogenetic trees and data are often stored in incompatible and inconsistent formats. The outputs of software tools that contain trees with analysis findings are often not compatible with each other, making it hard to integrate the results of different ...
Li-Gen Wang +13 more
semanticscholar +1 more source
Mitochondrial DNA. Part B. Resources, 2021 We determined a complete mitochondrial genome of Episoriculus leucops. This mitogenome is a circular molecule with 16,838 bp in length, containing 13 protein-coding genes, 22 transfer RNA genes (tRNA), and two ribosomal RNA genes (rRNA).
Dan Chen +4 more
doaj +1 more source