Results 101 to 110 of about 1,097,195 (292)

Adaptation to Leaf Traits of Individual Trees in a Forest Appears Rare in Caterpillars

Ecology and Evolution
High herbivore abundances on trees surrounded by distantly related neighbors (phylogenetic isolation) might in part be due to local adaptation of herbivores to host trees, but this has not been tested.
Freerk Molleman, Anna Sokół‐Łętowska, Soumen Mallick, Andreas Prinzing, Urszula Walczak   +4 more
doaj   +1 more source

RPANDA : an R package for macroevolutionary analyses on phylogenetic trees

, 2015
International audienceA number of approaches for studying macroevolution using phylogenetic trees have been developed in the last few years. Here, we present RPANDA, an R package that implements model‐free and model‐based phylogenetic comparative methods
Clavel, Julien, Drury, Jonathan, P, Condamine, Fabien L., Lewitus, Eric, Drury, Jonathan,, Morlon, Hélène   +5 more
core   +1 more source

Design and Engineering of an Artificial Bifunctional N‐Deacetylase/N‐Sulfotransferase for the Biosynthesis of N‐Sulfated Heparosan

Advanced Science, EarlyView.
An artificial bifunctional N‐deacetylase/N‐sulfotransferase was engineered in Escherichia coli by combining screened N‐deacetylases with an NST domain. The integrated engineering strategy improved enzyme performance. The optimized enzyme efficiently converted heparosan into N‐sulfated heparosan, addressing a key bottleneck in microbial heparin ...
Xintong Xi, Ruirui Xu, Daoan Wang, Guobin Yin, Xinjing Wang, Haiqin Chen, Guocheng Du, Jian Chen, Zhen Kang   +8 more
wiley   +1 more source

phylogenetic trees

, 2019
Phylogenetic trees generated from metabarcoding sequences using MrBayes 3.2.6 was used for phylogenetic Hill numbers ...
Aiqing Lin (839893), Goerlitz, Holger, Yang Chang (3924284), Yanhong Xiao (839890), Tinglei Jiang (443673), Holger Goerlitz (6668864), Zhang, Yu, Li, Zhongle, Aoqiang Li (6668861), Jiang, Tinglei, Xiao, Yanhong, Chang, Yang, Lin, Aiqing, Jiang Feng (286772), Li, Aoqiang, Yu Zhang (12946), Song, Shengjing, Feng, Jiang, Zhongle Li (1412926), Shengjing Song (6668858)   +19 more
core   +2 more sources

PhyloJS: Bridging phylogenetics and web development with a JavaScript utility library

Ecology and Evolution
There is an increasing number of libraries devoted to parsing, manipulating and visualising phylogenetic trees in JavaScript. Many of these libraries bundle tree manipulation with visualisation, but have limited ability to manipulate trees and lack ...
Leo A. Featherstone, Wytamma Wirth
doaj   +1 more source

SiDT1 Defines Plant Architecture Reminiscent of Green Revolution in Foxtail Millet

Advanced Science, EarlyView.
SiDT1 encodes a GA3‐oxidase that creates a semi‐dwarf, lodging‐resistant architecture reminiscent of the rice Green Revolution. The resulting ideotype performs well under dense planting and provides a valuable genetic resource for high‐yield, mechanized foxtail millet production. ABSTRACT Foxtail millet (Setaria italica) is a drought‐tolerant C4 cereal
Jianzhen Lv, Jinjin Cheng, Zhen Hu, Qian Lan, Yanjun Yang, Chengcheng Pei, Junhao Luo, Zhuang Li, Peiyong Xin, Jijun Yan, Jinfang Chu, Qian Qian, Zhaosheng Kong, Liang Jiang   +13 more
wiley   +1 more source

The geometry of independence tree models with hidden variables [PDF]

, 2010
In this paper we investigate the geometry of undirected discrete graphical models of trees when all the variables in the system are binary, where leaves represent the observable variables and where the inner nodes are unobserved.
Zwiernik, Piotr, Smith, J. Q.
core  

Single‐cell Transcriptome Profiling Reveals Gene Regulatory Networks and Key Genes in the Root Epidermis and Cortical Cells Associated with Early Nodulation in Glycine Max

Advanced Science, EarlyView.
Single‐cell transcriptomics of soybean roots soon after rhizobial inoculation reveals epidermal and cortical cell‐specific programs and gene‐regulatory networks acting in symbiosis establishment. We identify an ethylene‐driven regulatory circuit involving WRKY6.3/6.4 transcription factors targeting select Nod19 genes that promotes infection‐thread ...
Yongbin Zhuang, Yu Geng, Xinyu Guo, Chen Wang, Yongjing Sun, Luqi Liu, Li Liu, QianQian Gao, XinFang Zhu, Hongxiang Cao, Gengshuo Zhang, Yunxia Liu, Guobin Zhang, Baoyin Chen, Jinfei Zhang, Xin Hou, Xiaoming Li, Dajian Zhang   +17 more
wiley   +1 more source

Accurate Reconstruction of Molecular Phylogenies for Proteins Using Codon and Amino Acid Unified Sequence Alignments (CAUSA) [PDF]

, 2011
Based on molecular clock hypothesis, and neutral theory of molecular evolution, molecular phylogenies have been widely used for inferring evolutionary history of organisms and individual genes.
Jingjie Hu, Yu Fu, Yue Zhao, Chandra Sekhar Pedamallu, Yingbo Niu, Shuang-yong Xu, Xiaolong Wang, Qi Wang   +7 more
core  

A Pan‐Methylome Framework for Population‐Scale Bacterial Epigenomics

Advanced Science, EarlyView.
A scalable quantitative framework unlocks population‐level comparative epigenomics in bacteria. By transforming site‐level data into standardized traits, this approach reconstructs methylation‐informed phylogenies and defines the core epigenome.
Bin Ma, Huimin Gong, Ran Zhuo, Zaixiao Rao, Yanxi Wan, Mingyang Wang, Zahra Zeinalzadeh, Yuan Gao, Aohan Guan, Xinrun Li, Wanting Chen, Xiliang Wang, Yun Wan, Sihua Zhang, Yuncai Xiao, Qi Huang, Paul R. Langford, Xiangru Wang, Rui Zhou, Rui Luo, Hongbo Zhou, Chengliang Zhu, Hui Jin   +22 more
wiley   +1 more source