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Delphy: scalable, near-real-time Bayesian phylogenetics for outbreaks
Varilly P +24 more
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Archives of Microbiology, 2011
The recent rapid expansion in the DNA and protein databases, arising from large-scale genomic and metagenomic sequence projects, has forced significant development in the field of phylogenetics: the study of the evolutionary relatedness of the planet's inhabitants.
Bruce Leasure +54 more
+6 more sources
The recent rapid expansion in the DNA and protein databases, arising from large-scale genomic and metagenomic sequence projects, has forced significant development in the field of phylogenetics: the study of the evolutionary relatedness of the planet's inhabitants.
Bruce Leasure +54 more
+6 more sources
Cladistics, 2021
AbstractPhylogenetic graph structures used in empirical and theoretical analysis have expanded beyond trees to more general directed acyclic graphs including networks and forests. Several methods to reconcile multiple such graphs are presented and discussed here, extending existing consensus and supertree techniques to form a set of phylogenetic ...
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AbstractPhylogenetic graph structures used in empirical and theoretical analysis have expanded beyond trees to more general directed acyclic graphs including networks and forests. Several methods to reconcile multiple such graphs are presented and discussed here, extending existing consensus and supertree techniques to form a set of phylogenetic ...
openaire +2 more sources
2019
Phylogenetics is an important component of the systems biology approach. Knowledge about evolution of the genus Leishmania is essential to understand various aspects of basic biology of these parasites, such as parasite-host or parasite-vector relationships, biogeography, or epidemiology.
Katrin, Kuhls, Isabel, Mauricio
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Phylogenetics is an important component of the systems biology approach. Knowledge about evolution of the genus Leishmania is essential to understand various aspects of basic biology of these parasites, such as parasite-host or parasite-vector relationships, biogeography, or epidemiology.
Katrin, Kuhls, Isabel, Mauricio
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2008
Phylogenetic profiles describe the presence or absence of a protein in a set of reference genomes. Similarity between profiles is an indicator of functional coupling between gene products: the greater the similarity, the greater the likelihood of proteins sharing membership in the same pathway or cellular system.
Shailesh V, Date +1 more
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Phylogenetic profiles describe the presence or absence of a protein in a set of reference genomes. Similarity between profiles is an indicator of functional coupling between gene products: the greater the similarity, the greater the likelihood of proteins sharing membership in the same pathway or cellular system.
Shailesh V, Date +1 more
openaire +2 more sources
2017
This chapter introduces phylogenetics with a discussion of DNA, protein sequence information, and the construction of phylogenetic trees. It demonstrates how to use sequence information to categorize how species are related to each other. Phylogenetics is the utilization of sequence information to create evolutionary histories of species.
Jamil Momand +3 more
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This chapter introduces phylogenetics with a discussion of DNA, protein sequence information, and the construction of phylogenetic trees. It demonstrates how to use sequence information to categorize how species are related to each other. Phylogenetics is the utilization of sequence information to create evolutionary histories of species.
Jamil Momand +3 more
openaire +2 more sources
2003
Abstract ‘Phylogenetics’ is the reconstruction and analysis of phylogenetic (evolutionary) trees and networks based on inherited characteristics. It is a flourishing area of intereaction between mathematics, statistics, computer science and biology.
Charles Semple, Mike Steel
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Abstract ‘Phylogenetics’ is the reconstruction and analysis of phylogenetic (evolutionary) trees and networks based on inherited characteristics. It is a flourishing area of intereaction between mathematics, statistics, computer science and biology.
Charles Semple, Mike Steel
openaire +1 more source