Results 61 to 70 of about 512,344 (329)

The Mitochondrial Genome in Nematode Phylogenetics

Frontiers in Ecology and Evolution, 2020
In recent decades, great strides have been made using various kinds of data including molecular sequences to clarify the phylogenetic relationships of nematodes.
E. Kern, Taeho Kim, Joong-Ki Park
semanticscholar   +1 more source

Climate Warming as a Possible Trigger of Keystone Mussel Population Decline in Oligotrophic Rivers at the Continental Scale

Scientific Reports, 2018
The effects of climate change on oligotrophic rivers and their communities are almost unknown, albeit these ecosystems are the primary habitat of the critically endangered freshwater pearl mussel and its host fishes, salmonids.
Ivan N. Bolotov, Alexander A. Makhrov, Mikhail Yu. Gofarov, Olga V. Aksenova, Paul E. Aspholm, Yulia V. Bespalaya, Mikhail B. Kabakov, Yulia S. Kolosova, Alexander V. Kondakov, Thomas Ofenböck, Andrew N. Ostrovsky, Igor Yu. Popov, Ted von Proschwitz, Mudīte Rudzīte, Māris Rudzītis, Svetlana E. Sokolova, Ilmari Valovirta, Ilya V. Vikhrev, Maxim V. Vinarski, Alexey A. Zotin   +19 more
doaj   +1 more source

AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

Bioinform., 2008
UNLABELLED A key element to a successful Markov chain Monte Carlo (MCMC) inference is the programming and run performance of the Markov chain.
J. Nylander, James C. Wilgenbusch, D. Warren, D. Swofford   +3 more
semanticscholar   +1 more source

The effects of fossil taxa, hypothetical predicted ancestors, and a molecular scaffold on pseudoextinction analyses of extant placental orders.

PLoS ONE, 2021
Pseudoextinction analyses, which simulate extinction in extant taxa, use molecular phylogenetics to assess the accuracy of morphological phylogenetics. Previous pseudoextinction analyses have shown a failure of morphological phylogenetics to place some ...
Peggy L Brady, Mark S Springer
doaj   +1 more source

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

Systematic Biology, 2019
BEAGLE is a high-performance likelihood-calculation library for phylogenetic inference. The BEAGLE library defines a simple, but flexible, application programming interface (API), and includes a collection of efficient implementations for calculation ...
Daniel L. Ayres, Michael P. Cummings, G. Baele, Aaron E Darling, Paul O Lewis, D. Swofford, J. Huelsenbeck, P. Lemey, A. Rambaut, M. Suchard   +9 more
semanticscholar   +1 more source

DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution

Journal of Heredity, 2017
DAMBE is a comprehensive software workbench for data analysis in molecular biology, phylogenetics, and evolution. Several important new functions have been added since version 5 of DAMBE: 1) comprehensive genomic profiling of translation initiation ...
X. Xia
semanticscholar   +1 more source

A surrogate function for one-dimensional phylogenetic likelihoods

, 2017
Phylogenetics has seen an steady increase in substitution model complexity, which requires increasing amounts of computational power to compute likelihoods.
Brian C Claywell, Connor O McCoy, Frederick A Matsen IV, Mathieu Fourment, Vu Dinh   +4 more
core   +1 more source

Annotated check-list of Pteromalidae (Hymenoptera: Chalcidoidea) of Morocco. Part II.

Graellsia, 2021
En esta segunda parte, presentamos la subfamilia Pteromalinae en Marruecos, que incluye 86 especies pertenecientes a 50 géneros. Quince géneros y 37 especies se enumeran por primera vez en la fauna marroquí, de las cuales 9 han sido recientemente ...
Khadija Kissayi, Mircea-Dan Mitroiu, Latifa Rohi   +2 more
doaj   +1 more source

Phylogenomics — principles, opportunities and pitfalls of big‐data phylogenetics

Systematic Entomology, 2019
Phylogenetics is the science of reconstructing the evolutionary history of life on Earth. Traditionally, phylogenies were constructed using morphological data only, but the introduction of Sanger sequencing and PCR in the late 1970s enabled genetic ...
A. Young, J. Gillung
semanticscholar   +1 more source

The phylogenetic regression

Philosophical Transactions of the Royal Society of London. B, Biological Sciences, 1989
A new statistical method called the phylogenetic regression is proposed that applies multiple regression techniques to cross-species data. It allows continuous and categorical variables to be tested for and controlled for. The new method is valid despite the problem that phylogenetically close species tend to be similar, and is designed to be used when
openaire   +3 more sources