Data Reduction Pipeline for the CHARIS Integral-Field Spectrograph I: Detector Readout Calibration and Data Cube Extraction [PDF]
, 2017 We present the data reduction pipeline for CHARIS, a high-contrast integral-field spectrograph for the Subaru Telescope. The pipeline constructs a ramp from the raw reads using the measured nonlinear pixel response, and reconstructs the data cube using ...
Brandt, Timothy D. +16 more
core +1 more source
FEBS Open Bio, EarlyView.A tri‐culture of iPSC‐derived neurons, astrocytes, and microglia treated with ferroptosis inducers as an Induced ferroptosis model was characterized by scRNA‐seq, cell survival, and cytokine release assays. This analysis revealed diverse microglial transcriptomic changes, indicating that the system captures key aspects of the complex cellular ...
Hongmei Lisa Li +6 more
wiley +1 more source
Pydpiper: A Flexible Toolkit for Constructing Novel Registration Pipelines
Frontiers in Neuroinformatics, 2014 Using neuroimaging technologies to elucidate the relationship between genotype and phenotype and brain and behavior will be a key contribution to biomedical research in the twenty-first century.
Miriam eFriedel +7 more
doaj +1 more source
MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis. [PDF]
, 2015 Data-independent acquisition (DIA) in liquid chromatography (LC) coupled to tandem mass spectrometry (MS/MS) provides comprehensive untargeted acquisition of molecular data.
Arita, Masanori +9 more
core
A Pipeline for Phasing and Genotype Imputation on Mixed Human Data (Parents-Offspring Trios and Unrelated Subjects) by Reviewing Current Methods and Software [PDF]
, 2022 Giulia Nicole Baldrighi +3 more
openalex +1 more source
Software Pipelining of Nested Loops [PDF]
, 2001 Software pipelining is a technique to improve the performance of a loop by overlapping the execution of several iterations. The execution of a software-pipelined loop goes through three phases: prolog, kernel, and epilog. Software pipelining works best if most of the time is spent in the kernel phase rather than in the prolog or epilog phases. This can
Kalyan Muthukumar, Gautam Doshi
openaire +1 more source
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
Bioinform., 2017 Summary: We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. DFAST was originally started as an on‐line annotation server, and to date, over 7000 jobs have been processed since ...
Yasuhiro Tanizawa +2 more
semanticscholar +1 more source
BMI‐1 modulation and trafficking during M phase in diffuse intrinsic pontine glioma
FEBS Open Bio, EarlyView.The schematic illustrates BMI‐1 phosphorylation during M phase, which triggers its translocation from the nucleus to the cytoplasm. In cycling cells, BMI‐1 functions within the PRC1 complex to mediate H2A K119 monoubiquitination. Following PTC596‐induced M phase arrest, phosphorylated BMI‐1 dissociates from PRC1 and is exported to the cytoplasm via its
Banlanjo Umaru +6 more
wiley +1 more source
Animação Livre: uma proposta para uma pipeline e fluxo de trabalho baseados em Software Livre [PDF]
, 2011 OpenLab ESEV is a project of the Polytechnic Institute of Viseu’s School of Education that aims to promote, foster and support the use of Free/Libre and Open Source Software (F/LOSS), Free file formats and more flexible copyright licenses for creative ...
Figueiredo, Maria Pacheco +1 more
core
Rigorous software pipeline for clinical somatic mutation analyses of solid tumors [PDF]
, 2023 Ivaylo Stoimenov +8 more
openalex +1 more source