Results 21 to 30 of about 6,859,921 (298)
Sequence-to-Structure Relation in Proteins-Amyloidogenic Proteins with Chameleon Sequences [PDF]
Journal of Proteomics & Bioinformatics, 2016 The existence of polypeptide chain fragments in which identical sequences translate into different secondary folds gives rise to questions concerning the structural variability associated with amyloidogenesis. In this paper the structural contribution of identical sequences to a common hydrophobic core is assessed on the basis of the fuzzy oil
Banach, Mateusz +3 more
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Bayesian sequence learning for predicting protein cleavage points [PDF]
, 2005 A challenging problem in data mining is the application of efficient techniques to automatically annotate the vast databases of biological sequence data.
Michael Mayo, Mayo, Michael
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Methods for comparing a DNA sequence with a protein sequence [PDF]
Bioinformatics, 1996 We describe two methods for constructing an optimal global alignment of, and an optimal local alignment between, a DNA sequence and a protein sequence. The alignment model of the methods addresses the problems of frameshifts and introns in the DNA sequence. The methods require computer memory proportional to the sequence lengths, so they can rigorously
Huang, Xiaoqiu, Zhang, Jinghui
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Journal of Integrative Bioinformatics, 2019 The interconversion of sequences that constitute the genome and the proteome is becoming increasingly important due to the generation of large amounts of DNA sequence data. Following mapping of DNA segments to the genome, one fundamentally important task
Li Yaoyong +2 more
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Why similar protein sequences encode similar three-dimensional structures? [PDF]
, 2010 Evolutionarily related proteins have similar sequences. Such similarity is called homology and can be described using substitution matrices such as Blosum 60.
Zielenkiewicz, Piotr +1 more
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Evolutionary Study of Disorder in Protein Sequences
Biomolecules, 2020 Intrinsically disordered proteins (IDPs) contain regions lacking intrinsic globular structure (intrinsically disordered regions, IDRs). IDPs are present across the tree of life, with great variability of IDR type and frequency even between closely ...
Kristina Kastano +6 more
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FEGS: a novel feature extraction model for protein sequences and its applications
BMC Bioinformatics, 2021 Background Feature extraction of protein sequences is widely used in various research areas related to protein analysis, such as protein similarity analysis and prediction of protein functions or interactions.
Zengchao Mu +5 more
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Machine Learning Model for Predicting Antibiotic Resistance Patterns from Protein Sequences [PDF]
E3S Web of ConferencesAntibiotic resistance (AR) has emerged as a pressing global health challenge, undermining the effectiveness of conventional treatment options and threatening public health systems around the world.
Ahumaraeze Princewill +8 more
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Two Dimensional Yau-Hausdorff Distance with Applications on Comparison of DNA and Protein Sequences. [PDF]
PLoS ONE, 2015 Comparing DNA or protein sequences plays an important role in the functional analysis of genomes. Despite many methods available for sequences comparison, few methods retain the information content of sequences.
Kun Tian +5 more
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Repeatability in protein sequences
Journal of Structural Biology, 2019 Low complexity regions (LCRs) in protein sequences have special properties that are very different from those of globular proteins. The rules that define secondary structure elements do not apply when the distribution of amino acids becomes biased.
Mohamed Kamel +3 more
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