Results 211 to 220 of about 986,500 (268)

How Well Do Molecular Dynamics Force Fields Model Peptides: A Systematic Benchmark across Diverse Folding Behaviors. [PDF]

J Phys Chem B
Singh B, Martínez-Noa Y, Perez A.
europepmc   +1 more source

Guidelines for Comparing Circular Dichroism Spectroscopy and Molecular Dynamics Simulations for Biomolecules. [PDF]

Chemphyschem
Campus C, Roldo M, Chen CH, Hadianamrei R, Gavini E, Jorgensen C.   +5 more
europepmc   +1 more source

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Protein secondary structure prediction

Current Opinion in Structural Biology, 1995
The past year has seen a consolidation of protein secondary structure prediction methods. The advantages of prediction from an aligned family of proteins have been highlighted by several accurate predictions made 'blind', before any X-ray or NMR structure was known for the family.
S R, Krystek, W J, Metzler, J, Novotny
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Secondary Structure and Protein Deamidation

Journal of Pharmaceutical Sciences, 1999
The deamidation reactions of asparagine residues in alpha-helical and beta-turn secondary structural environments of peptides and proteins are reviewed. Both kinds of secondary structure tend to stabilize asparagine residues against deamidation, although the effects are not large.
M, Xie, R L, Schowen
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Characterization of protein secondary structure

IEEE Signal Processing Magazine, 2004
What do proteins look like? Proteins are composed of fundamental building blocks of chemical molecules called amino acids. When a protein is synthesized by the cells, initially it is just a string of amino acids. This string arranges itself in a process called protein folding into a complex three-dimensional structure capable of exerting the function ...
Madhavi K. Ganapathiraju, Judith Klein-Seetharaman, Narayanaswamy Balakrishnan 0001, Raj Reddy   +3 more
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Consistent Sets of Secondary Structures in Proteins

Algorithmica, 2007
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Piotr Berman, Jieun K. Jeong
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Protein Secondary Structure Prediction with SPARROW

Journal of Chemical Information and Modeling, 2012
A first step toward predicting the structure of a protein is to determine its secondary structure. The secondary structure information is generally used as starting point to solve protein crystal structures. In the present study, a machine learning approach based on a complete set of two-class scoring functions was used.
Francesco Bettella, Dawid Rasinski, Ernst-Walter Knapp   +2 more
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Comparison of Super-secondary Structures in Proteins

Journal of Molecular Biology, 1973
Abstract A method of comparing the conformations of different, but structurally related proteins is described. Local variations, such as the systematic translation of a helix, or the position of deletions and insertions can be detected, and the correspondence of only marginally similar structures can be measured.
S T, Rao, M G, Rossmann
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