Mathematical and Machine Learning Approaches for Classification of Protein Secondary Structure Elements from Cα Coordinates [PDF]
Biomolecules, 2023 Determining Secondary Structure Elements (SSEs) for any protein is crucial as an intermediate step for experimental tertiary structure determination. SSEs are identified using popular tools such as DSSP and STRIDE.
Ali Sekmen +4 more
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Protein secondary structure in spider silk nanofibrils [PDF]
Nature Communications, 2022 Secondary fibril structure is a key component of the mechanical properties of protein materials like silk, yet, limited information is known about the internal structure of these protein fibrils. Here, the authors report on the use of polarised Raman and
Qijue Wang +8 more
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Discovering the Ultimate Limits of Protein Secondary Structure Prediction [PDF]
Biomolecules, 2021 Secondary structure prediction (SSP) of proteins is an important structural biology technique with many applications. There have been ~300 algorithms published in the past seven decades with fierce competition in accuracy.
Chia-Tzu Ho +4 more
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Prediction of protein secondary structure based on an improved channel attention and multiscale convolution module [PDF]
Frontiers in Bioengineering and Biotechnology, 2022 Prediction of the protein secondary structure is a key issue in protein science. Protein secondary structure prediction (PSSP) aims to construct a function that can map the amino acid sequence into the secondary structure so that the protein secondary ...
Xin Jin +9 more
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A secondary structure-based position-specific scoring matrix applied to the improvement in protein secondary structure prediction. [PDF]
PLoS ONE, 2021 Protein secondary structure prediction (SSP) has a variety of applications; however, there has been relatively limited improvement in accuracy for years.
Teng-Ruei Chen +4 more
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Impact of Multi-Factor Features on Protein Secondary Structure Prediction [PDF]
BiomoleculesProtein secondary structure prediction (PSSP) plays a crucial role in resolving protein functions and properties. Significant progress has been made in this field in recent years, and the use of a variety of protein-related features, including amino acid
Benzhi Dong +5 more
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Protein Secondary Structure Prediction With a Reductive Deep Learning Method [PDF]
Frontiers in Bioengineering and Biotechnology, 2021 Protein secondary structures have been identified as the links in the physical processes of primary sequences, typically random coils, folding into functional tertiary structures that enable proteins to involve a variety of biological events in life ...
Zhiliang Lyu +5 more
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Automated Protein Secondary Structure Assignment from Cα Positions Using Neural Networks [PDF]
Biomolecules, 2022 The assignment of secondary structure elements in protein conformations is necessary to interpret a protein model that has been established by computational methods.
Mohammad N. Saqib +2 more
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Linkers of secondary structures in proteins [PDF]
Protein Science, 1997 AbstractLinkers that connect repeating secondary structures fall into conformational classes based on distance and main‐chain torsion clustering. A data set of 300 unique protein chains with low pairwise sequence identity was clustered into only a few groups representing the preferred motifs.
V, Geetha, P J, Munson
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Frontiers in Chemistry, 2021 Development of protein 3-D structural comparison methods is important in understanding protein functions. At the same time, developing such a method is very challenging.
Sarika Kondra +3 more
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