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Domain discovery method for topological profile searches in protein structures [PDF]
, 2004 We describe a method for automated domain discovery for topological profile searches in protein structures. The method is used in a system TOPStructure for fast prediction of CATH classification for protein structures (given as PDB files).
Viksna, J, Gilbert, D, Torrance, G
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Prediction of Protein Function Using Statistically Significant Sub-Structure Discovery [PDF]
, 2007 Proteins perform a vast number of functional roles. The number of protein structures available for analysis continues to grow and, with the development of methods to predict protein structure directly from genetic sequence without imaging technology, the
Lucas, Craig
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Biomolecules, 2020 The model of protein folding proposed by Ptitsyn and colleagues involves the accretion of secondary structures around a nucleus. As developed by Efimov, this model also provides a useful way to view the relationships among structures.
William R. Taylor
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BMC Bioinformatics, 2020 Background Whenever suitable template structures are not available, usage of fragment-based protein structure prediction becomes the only practical alternative as pure ab initio techniques require massive computational resources even for very small ...
Jad Abbass, Jean-Christophe Nebel
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Protein Backbone Torsion Angle-Based Structure Comparison and Secondary Structure Database Web Server [PDF]
Genomics & Informatics, 2013 Structural information has been a major concern for biological and pharmaceutical studies for its intimate relationship to the function of a protein. Three-dimensional representation of the positions of protein atoms is utilized among many structural ...
Sunghoon Jung +3 more
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Comparative visualization of protein secondary structures [PDF]
BMC Bioinformatics, 2017 Protein function is determined by many factors, namely by its constitution, spatial arrangement, and dynamic behavior. Studying these factors helps the biochemists and biologists to better understand the protein behavior and to design proteins with modified properties.
Lucia Kocincová +5 more
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Predicting protein secondary structure based on ensemble Neural Network
ITEGAM-JETIA, 2021 Protein structure prediction is very vital to innovative process of discovering new medications based on the knowledge of a biological target. It is also useful for scientifically exposing the biological basis of convoluted diseases and drug effects ...
Emmanuel Gbenga Dada +3 more
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Properties and origins of protein secondary structure [PDF]
Physical Review E, 1994 12 pages (+4 figures, included in a single postscript file), LaTeX + RevTeX 3 ...
Socci, Nicholas D. +2 more
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PROTEIN SECONDARY STRUCTURE RECOGNITION PROCEDURES
Міжнародний науково-технічний журнал "Проблеми керування та інформатики", 2007 The results of numerical computation of protein secondary structures prediction based on Bayesian recognition procedures on nonstationary Markov chains are considered.
B.A. Beletskiy +3 more
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Bayesian Segmentation of Protein Secondary Structure [PDF]
Journal of Computational Biology, 2000 We present a novel method for predicting the secondary structure of a protein from its amino acid sequence. Most existing methods predict each position in turn based on a local window of residues, sliding this window along the length of the sequence. In contrast, we develop a probabilistic model of protein sequence/structure relationships in terms of ...
Scott C. Schmidler +2 more
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