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Protein Tertiary Structure Prediction

2006
One of the most important scientific achievements of the twentieth century was the discovery of the DNA double helical structure by Watson and Crick in 1953. Strictly speaking, the work was the result of a three-dimensional modeling conducted partly based on data obtained from x-ray diffraction of DNA and partly based on chemical bonding information ...
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Tertiary Structure Is a Principal Determinant to Protein Deamidation

Science, 1988
The protein deamidation process involves the conversion of the amide side-chain moieties of asparagine and glutamine residues to carboxyl groups. This conversion is an unusual form of protein modification in that it requires catalysis by an intramolecular reaction where both the substrate (asparagine and glutamine side chains) and "catalytic site" (the
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Correlation of sequence and tertiary structure in globular proteins

Biopolymers, 1977
AbstractThe x‐ray crystal structures of 19 selected proteins are examined empirically for correlations between the amino acid sequence and long‐range, tertiary conformation. There is clear evidence for preferential associations of certain types of amino acids, particularly among the hydrophobic aliphatic, aromatic, and cysteine residues.
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Comment on ‘‘Fractal study of tertiary structure of proteins’’

Physical Review E, 1994
It is shown that the mean fractal dimension of the global structure of 90 proteins is greater than that of an unrestricted random walk. Some modifications on the method of calculating the length of the backbone of a protein chain and a possible connection of the mean fractal dimensions of the local structures with the secondary structures of proteins ...
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A Hybrid Predictor for Protein Tertiary Structures

2022
Alexandre Almeida, Telma Woerle de Lima
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Constructive induction and protein tertiary structure prediction.

Proceedings. International Conference on Intelligent Systems for Molecular Biology, 1995
To date, the only methods that have been used successfully to predict protein structures have been based on identifying homologous proteins whose structures are known. However, such methods are limited by the fact that some proteins have similar structure but no significant sequence homology.
Thomas R. Ioerger   +2 more
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An amino acid code to define a protein's tertiary packing surface

Proteins: Structure, Function and Bioinformatics, 2016
Jerry Tsai, Hyun Joo
exaly  

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