Results 151 to 160 of about 417,581 (263)

Evolution‐guided yeast complementation reveals functional differences in human PSPH variants

FEBS Open Bio, EarlyView.
Ancient genomes can help guide which human genetic variants are tested experimentally. This study applies that idea to PSPH, a gene involved in serine biosynthesis, and uses high‐throughput yeast complementation to compare variant function. The findings reveal measurable differences among selected alleles and illustrate the value of evolution‐guided ...
Mauricio Campa‐Álvarez, Diana Ascencio, Miguel Vallebueno‐Estrada, Eduardo González‐Orozco, Christian Eduardo Martínez‐Guerrero, Rafael Montiel, Alexander DeLuna   +6 more
wiley   +1 more source

DeepFold-PLM: accelerating protein structure prediction via efficient homology search using protein language models. [PDF]

Bioinformatics
Kim M, Bae H, Jo G, Kim K, Lee SJ, Yoo J, Joo K.   +6 more
europepmc   +1 more source

Target-template relationships in protein structure prediction and their effect on the accuracy of thermostability calculations. [PDF]

Protein Sci, 2023
Lihan M, Lupyan D, Oehme D.
europepmc   +1 more source

Identifying and characterising a plant GH1 β‐glucosidase that exhibits hydrolytic activity on N‐linked glucopyranoside

FEBS Open Bio, EarlyView.
We report the first β‐glucosidase with demonstrated hydrolytic activity on an N‐linked glycopyranoside. The enzyme, native to maize, was biochemically characterised for this novel reaction, and structural modelling of the enzyme–substrate complex revealed several clues to the underlying reduced catalytic rate relative to its native O‐glycopyranoside ...
Hani Gharabli, Carlotta Chiesa, Maher Abou Hachem, Ditte Hededam Welner   +3 more
wiley   +1 more source

Phyre2.2: A Community Resource for Template-based Protein Structure Prediction. [PDF]

J Mol Biol
Powell HR, Islam SA, David A, Sternberg MJE.   +3 more
europepmc   +1 more source

Improving protein structure prediction using templates and sequence embedding. [PDF]

Bioinformatics, 2023
Wu F, Jing X, Luo X, Xu J.
europepmc   +1 more source

Structural studies and functional engineering of NanX: an anhydro‐sialic acid transporter from Escherichia coli

FEBS Open Bio, EarlyView.
Biophysical characterisation shows that NanX, a membrane transport protein from the major facilitator superfamily (MFS), forms both monomers and dimers after purification. AlphaFold modelling and substrate docking provide information on residues likely involved in substrate recognition for NanX and another MFS member, NanT.
Michael C. Newton‐Vesty, Kelsi R. Hall, Zachary D. Tillett, Liam S. Turk, James S. Davies, Michael J. Currie, Hamish G. Brown, Sepideh Valimehr, Peter D. Mace, Andrew E. Whitten, Santosh Panjikar, Eric Hanssen, Rachel A. North, Renwick C.J. Dobson   +13 more
wiley   +1 more source

Novel De Novo DLL4 Missense and Highly Accurate Protein Structure Prediction in Adams-Oliver Type 6 Syndrome. [PDF]

Clin Case Rep
Cabrera R, Montañez MYB, Gil-Quiñones SR, Beltrán AM, Santiago-Tovar N, Contreras-Bravo N, Fonseca-Mendoza DJ, Restrepo CM, Morel A.   +8 more
europepmc   +1 more source

Ab initio protein structure prediction: the necessary presence of external force field as it is delivered by Hsp40 chaperone. [PDF]

BMC Bioinformatics, 2023
Roterman I, Stapor K, Konieczny L.
europepmc   +1 more source

In silico and in vitro exploration of a tyrosinase for biocatalytic production of catechols

FEBS Open Bio, EarlyView.
Tyrosinase from Ralstonia pseudosolanacearum is a promising biocatalyst for producing valuable catechols from monophenol substrates. This tyrosinase is uniquely suited to this due to its high monophenolase : diphenolase ratio. We combined in silico docking and in vivo kinetic characterisation of this tyrosinase with 11 industrially relevant monophenols,
James Britton, Fang Zhao, Reeta Davis, Meg Walsh, Kevin E O'Connor, David O'Connell, Tanja Narancic   +6 more
wiley   +1 more source