Results 11 to 20 of about 166,818 (301)

AF2-mutation: adversarial sequence mutations against AlphaFold2 in protein tertiary structure prediction [PDF]

Acta Materia Medica
Proteins are essential macromolecules that perform functions according to their conformational dynamics. Studying the conformational changes induced by protein mutations is the standard approach used to understand the mechanisms underlying mutation ...
Zhongju Yuan, Tao Shen, Sheng Xu, Leiye Yu, Bin Pang, Bing Gan, Qiantai Feng, Ruobing Ren, Siqi Sun   +8 more
doaj   +2 more sources

CoMOGrad and PHOG: From Computer Vision to Fast and Accurate Protein Tertiary Structure Retrieval. [PDF]

Sci Rep, 2015
Karim R, Aziz MM, Shatabda S, Rahman MS, Mia MA, Zaman F, Rakin S.   +6 more
europepmc   +3 more sources

Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. [PDF]

Proteins, 2019
Hou J, Wu T, Cao R, Cheng J.
europepmc   +3 more sources

KScons: a Bayesian approach for protein residue contact prediction using the knob-socket model of protein tertiary structure. [PDF]

Bioinformatics, 2016
Li Q, Dahl DB, Vannucci M, Joo H, Tsai JW.   +4 more
europepmc   +3 more sources

CONSTRUCT: an algorithmic tool for identifying functional or structurally important regions in protein tertiary structure. [PDF]

Bioinformatics
Chivot L, Mathieux N, Cosson A, Bridier-Nahmias A, Favennec L, Gelly JC, Clain J, Coppée R.   +7 more
europepmc   +5 more sources

Molecular and in silico analysis of the coat protein of hibiscus chlorotic ringspot virus isolates [PDF]

Journal of Crop Protection, 2023
Hibiscus chlorotic ringspot virus (HCRSV), genus Betacarmovirus, family Tombusviridae, is a common pathogen of hibiscus plants in tropical and subtropical regions. During 2020-2021, leaf samples of Chinese hibiscus Hibiscus rosa-sinensis L. with mottling
Nadia Mosharaf, Saeid Tabein, Mehdi Mehrabi-Koushki, Seyed Ali Hemmati, Abozar Ghorbani   +4 more
doaj   +1 more source

Protein Macrocyclization for Tertiary Structure Stabilization [PDF]

ChemBioChem, 2021
AbstractProteins possess unique molecular recognition capabilities and enzymatic activities, features that are usually tied to a particular tertiary structure. To make use of proteins for biotechnological and biomedical purposes, it is often required to enforce their tertiary structure in order to ensure sufficient stability under the conditions ...
Anissa Haim, Saskia Neubacher, Tom N. Grossmann   +2 more
openaire   +3 more sources

Characterization of two conserved cell death elicitor families from the Dothideomycete fungal pathogens Dothistroma septosporum and Fulvia fulva (syn. Cladosporium fulvum)

Frontiers in Microbiology, 2022
Dothistroma septosporum (Ds) and Fulvia fulva (Ff; previously called Cladosporium fulvum) are two closely related Dothideomycete fungal species that cause Dothistroma needle blight in pine and leaf mold in tomato, respectively.
Mariana Tarallo, Rebecca L. McDougal, Zhiyuan Chen, Yan Wang, Rosie E. Bradshaw, Carl H. Mesarich   +5 more
doaj   +1 more source

Data Size and Quality Matter: Generating Physically-Realistic Distance Maps of Protein Tertiary Structures

Biomolecules, 2022
With the debut of AlphaFold2, we now can get a highly-accurate view of a reasonable equilibrium tertiary structure of a protein molecule. Yet, a single-structure view is insufficient and does not account for the high structural plasticity of protein ...
Fardina Fathmiul Alam, Amarda Shehu
doaj   +1 more source

Image-based effective feature generation for protein structural class and ligand binding prediction [PDF]

PeerJ Computer Science, 2020
Proteins are the building blocks of all cells in both human and all living creatures of the world. Most of the work in the living organism is performed by proteins.
Nafees Sadique, Al Amin Neaz Ahmed, Md Tajul Islam, Md. Nawshad Pervage, Swakkhar Shatabda   +4 more
doaj   +2 more sources