Results 21 to 30 of about 166,818 (301)
Reducing Ensembles of Protein Tertiary Structures Generated De Novo via Clustering
Molecules, 2020 Controlling the quality of tertiary structures computed for a protein molecule remains a central challenge in de-novo protein structure prediction. The rule of thumb is to generate as many structures as can be afforded, effectively acknowledging that ...
Ahmed Bin Zaman +3 more
doaj +1 more source
I 3D3P: an Intelligent 3D Protein Prediction Platform
Proceedings of the International Conference on Applied Innovations in IT, 2022 Proteins are macromolecules consisting of a chain of smaller molecules (i.e. amino acids) known as monomers. Three levels of protein structure are distinguished: primary, secondary and tertiary.
Mohamed Hachem Kermani, Zizette Boufaida
doaj +1 more source
EasyModel: a user-friendly web-based interface based on MODELLER
Scientific Reports, 2023 Three-dimensional protein structures are invaluable sources of information for the functional annotation of protein molecules. Describing the function of a protein sequence is one of the most common problems in biology.
Seyed Shahriar Arab, Alireza Dantism
doaj +1 more source
Ultrasonics Sonochemistry, 2023 The effects of air thawing (AT), water immersion thawing (WT), microwave thawing (MT) and ultrasound combined with slightly acidic electrolyzed water thawing (UST) on the myofibrillar protein (MP) properties (surface hydrophobicity, solubility, turbidity,
Dewei Kong +8 more
doaj +1 more source
Evaluating Autoencoder-Based Featurization and Supervised Learning for Protein Decoy Selection
Molecules, 2020 Rapid growth in molecular structure data is renewing interest in featurizing structure. Featurizations that retain information on biological activity are particularly sought for protein molecules, where decades of research have shown that indeed ...
Fardina Fathmiul Alam +2 more
doaj +1 more source
BMC Bioinformatics, 2023 Background CRISPR-Cas-Docker is a web server for in silico docking experiments with CRISPR RNAs (crRNAs) and Cas proteins. This web server aims at providing experimentalists with the optimal crRNA-Cas pair predicted computationally when prokaryotic ...
Ho-min Park +7 more
doaj +1 more source
De novo protein structure prediction using ultra-fast molecular dynamics simulation. [PDF]
PLoS ONE, 2018 Modern genomics sequencing techniques have provided a massive amount of protein sequences, but experimental endeavor in determining protein structures is largely lagging far behind the vast and unexplored sequences.
Ngaam J Cheung, Wookyung Yu
doaj +1 more source
CASP11--An Evaluation of a Modular BCL::Fold-Based Protein Structure Prediction Pipeline. [PDF]
PLoS ONE, 2016 In silico prediction of a protein's tertiary structure remains an unsolved problem. The community-wide Critical Assessment of Protein Structure Prediction (CASP) experiment provides a double-blind study to evaluate improvements in protein structure ...
Axel W Fischer +7 more
doaj +1 more source
Comparative analysis of low-frequency vibrational spectra of native and denatured proteins [PDF]
Известия Саратовского университета. Новая серия: ФизикаBackground and Objectives: Changes in the secondary and tertiary structures of protein molecules during thermal denaturation lead to changes in their vibrational spectra.
Mankova, Anna A. +2 more
doaj +1 more source
Nova Biotechnologica et Chimica, 2015 Calcium phosphate nanoparticles (CaPNP) have good biocompatibility and bioactivity inside human body. In this study, the interaction between CaPNP and human chorionic gonadotropin (hCG) was analyzed to determine the changes in the protein structure in ...
Al-Hakeim Hussein K +3 more
doaj +1 more source