Results 51 to 60 of about 1,255 (213)

Phosphoinositides and inositol phosphates as molecular glues

open access: yesFEBS Letters, EarlyView.
Inositol phosphates (IPs) and phosphoinositides (PIPs) regulate diverse eukaryotic processes. Beyond recruiting signaling proteins or acting as structural cofactors, recent studies suggest they mediate protein–protein interactions as natural molecular glues.
Aleshia Seaton‐Terry   +9 more
wiley   +1 more source

On the parameters of r-dimensional toric codes

open access: yesFinite Fields and Their Applications, 2007
From a rational convex polytope of dimension $r\ge 2$ J.P. Hansen constructed an error correcting code of length $n=(q-1)^r$ over the finite field $\fq$. A rational convex polytope is the same datum as a normal toric variety and a Cartier divisor. The code is obtained evaluating rational functions of the toric variety defined by the polytope at the ...
openaire   +3 more sources

Balancing Cyclic $R$-ary Gray Codes [PDF]

open access: yesThe Electronic Journal of Combinatorics, 2007
New cyclic $n$-digit Gray codes are constructed over $\{0, 1, \ldots, R-1 \}$ for all $R \ge 3$, $n \ge 2$. These codes have the property that the distribution of the digit changes (transition counts) is close to uniform: For each $n \ge 2$, every transition count is within $R-1$ of the average $R^n/n$, and for the $2$-digit codes every ...
Mary Flahive, Bella Bose
openaire   +2 more sources

Circular RNA expression landscapes in myelodysplastic neoplasms: Associations with mutational signatures and disease progression

open access: yesMolecular Oncology, EarlyView.
In this explorative study, the abundance of circular RNA molecules in bone marrow stem cells was found to be elevated in patients with high‐risk myelodysplastic neoplasms, and to be associated with an increased risk of progression to acute myeloid leukemia.
Eileen Wedge   +17 more
wiley   +1 more source

Rank-metric codes as ideals for subspace codes and their weight properties

open access: yesAKCE International Journal of Graphs and Combinatorics, 2019
Let q=pr, p a prime, r a positive integer, and Fqthe Galois field with cardinality q and characteristic p. In this paper, we study some weight properties of rank-metric codes and subspace codes. The rank weight is not egalitarian nor homogeneous, and the
Bryan S. Hernandez, Virgilio P. Sison
doaj   +1 more source

Subtype‐specific enhancer RNAs define transcriptional regulators and prognosis in breast cancers

open access: yesMolecular Oncology, EarlyView.
This study employed machine learning methodologies to perform the subtype‐specific classification of RNA‐seq data sets, which are mapped on enhancers from TCGA‐derived breast cancer patients. Their integration with gene expression (referred to as ProxCReAM eRNAs) and chromatin accessibility profiles has the potential to identify lineage‐specific and ...
Aamena Y. Patel   +6 more
wiley   +1 more source

Network divergence analysis identifies adaptive gene modules and two orthogonal vulnerability axes in pancreatic cancer

open access: yesMolecular Oncology, EarlyView.
Tumors contain diverse cellular states whose behavior is shaped by context‐dependent gene coordination. By comparing gene–gene relationships across biological contexts, we identify adaptive transcriptional modules that reorganize into distinct vulnerability axes.
Brian Nelson   +9 more
wiley   +1 more source

Pre‐analytical optimization of cell‐free DNA and extracellular vesicle‐derived DNA for mutation detection in liquid biopsies

open access: yesMolecular Oncology, EarlyView.
Pre‐analytical handling critically determines liquid biopsy performance. This study defines practical best‐practice conditions for cell‐free DNA (cfDNA) and extracellular vesicle–derived DNA (evDNA), showing how processing time, storage conditions, tube type, and plasma input volume affect DNA integrity and mutation detection.
Jonas Dohmen   +11 more
wiley   +1 more source

Quantum Codes from Galois Hulls of Constacyclic Codes over a Finite Non-Chain Ring

open access: yesEntropy
We study the algebraic structures of constacyclic codes over a new finite non-chain ring R and their l-Galois dual codes based on a new Gray map ϕ and determine the dimensions of the l-Galois hull of constacyclic codes over R.
Enbin Zhang, Bo Kong, Xiying Zheng
doaj   +1 more source

Supplementary Methods and Figures;R code;R code;R code;R code from Growth strategies of a model picoplankter depend on social milieu and pCO2

open access: yes, 2021
Code for growth rate and metabolism calculations;Code for statistical tests;Code for carbon allocation changes;Code for regression to mean ...
Collins, Sinead, Schaum, C. Elisa
openaire   +1 more source

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