Results 51 to 60 of about 125,297 (309)

RANDOMIZED ALGORITHMS FOR MOTIF DETECTION [PDF]

Journal of Bioinformatics and Computational Biology, 2005
Motivation: Motif detection for DNA sequences has many important applications in biological studies, e.g. locating binding sites regulatory signals, designing genetic probes etc. In this paper, we propose a randomized algorithm, design an improved EM algorithm and combine them to form a software tool. Results: (1) We design a randomized algorithm for
Lusheng Wang 0001, Liang Dong
openaire   +2 more sources

Analysing Randomized Distributed Algorithms [PDF]

, 2004
Randomization is of paramount importance in practical applications and randomized algorithms are used widely, for example in co-ordinating distributed computer networks, message routing and cache management.
Gethin Norman
core   +1 more source

Salmonella lipopolysaccharide‐containing supported lipid bilayers as platforms to study bacteriophage interactions

FEBS Letters, EarlyView.
We present robust protocols for the preparation of supported lipid bilayers (SLBs) incorporating either Salmonella smooth LPS or outer membrane vesicles (OMVs). We use a combination of quartz crystal microbalance with dissipation (QCM‐D) and fluorescence microscopy to both characterize the SLBs of various compositions and to probe their interactions ...
Hudson P. Pace, Alyssa Borges, Charles Arnaud, Tove Karlsson, Nina K. Bröker, Stefanie Barbirz, Marta Bally   +6 more
wiley   +1 more source

A Randomized Algorithm for 3-SAT [PDF]

Mathematics in Computer Science, 2010
In this work we propose and analyze a simple randomized algorithm to find a satisfiable assignment for a Boolean formula in conjunctive normal form (CNF) having at most 3 literals in every clause. Given a k-CNF formula phi on n variables, and alpha in{0,1}^n that satisfies phi, a clause of phi is critical if exactly one literal of that clause is ...
Subhas Kumar Ghosh, Janardan Misra
openaire   +2 more sources

Selection Via the Bogo-Method - More on the Analysis of Perversely Awful Randomized Algorithms [PDF]

, 2018
We continue our research on perversely awful randomized algorithms, which started nearly a decade ago. Based on the bogo-method we design a bogo-selection algorithm and variants thereof and analyse them with elementary methods.
Maurer, Jan-Tobias, Holzer, Markus
core   +1 more source

Structural insights and therapeutic targets in Acinetobacter baumannii capsule biosynthesis

FEBS Letters, EarlyView.
Hypervirulent KL49 A. baumannii's capsular polysaccharide contains the nonulosonic acid 8‐epi‐Leg5,7Ac2, synthesized by epimerization via ElaA, ElaB, and ElaC. Crystal structures of ElaA, ElaB, and ElaC reveal their role in CMP‐Leg5,7Ac2 synthesis and regioselective C8 epimerization.
Woo Cheol Lee, Junho Jeong, Chae Yeong Lee, Hyunjoon Cho, Man Hwan Oh, Je Chul Lee, Jee‐Young Lee, Yangmee Kim   +7 more
wiley   +1 more source

A New Randomized Algorithm for Handling Scheduling Conflicts in Grids

Advances in Electrical and Computer Engineering, 2009
As the scale of Grid platforms grows, the idea of a centralized scheduler loses its efficiency, and it is replaced with the scheme of decentralized schedulers.
VAHDAT-NEJAD, H., ZAMANIFAR, K.
doaj   +1 more source

Probability-boosting technique for combinatorial optimization [PDF]

PeerJ Computer Science
In many combinatorial optimization problems we want a particular set of k out of n items with some certain properties (or constraints). These properties may involve the k items.
Sanpawat Kantabutra
doaj   +2 more sources

The role of miR‐335‐5p in the redifferentiation of BRAF p.V600E thyroid cancers

Molecular Oncology, EarlyView.
The BRAF p.V600E mutation promotes thyroid cancer dedifferentiation and radioiodine resistance. Using a network approach, we identified miR‐335‐5p as a key regulator of BRAF‐mutated thyroid tumors. Restoring miR‐335‐5p increased thyroid‐specific gene expression and iodine uptake in cells and organoids.
Valeria Pecce, Simone Bini, Marialuisa Sponziello, Giorgio Grani, Giulia Fiscon, Paola Paci, Lorenzo Farina, Rosa Falcone, Valentina Maggisano, Sebastiano Filetti, Cosimo Durante, Antonella Verrienti   +11 more
wiley   +1 more source

Interrogating the immune landscape of microsatellite stable RAS‐mutated colon cancer

Molecular Oncology, EarlyView.
COLOSSUS project RAS‐mutated MSS colon cancer study explored transcriptomics and immune cell density by immunohistochemistry (IHC), Immunoscore (IS), ISIC/TuLIS scores, mutation counts, and detected different prevalences but similar microenvironment composition across immune markers with clinical relevance for future immunotherapy combination ...
Rodrigo Dienstmann, Eduardo García‐Galea, Alice O'Farrell, Zak Kinsella, Maxime Meylan, Florent Petitprez, Ingrid Arijs, Tom Venken, Hari Ps, Adrian Lärkeryd, Ian Miller, Janick Selves, Nadja Meindl‐Beinker, Fiorella Ruiz‐Pace, Elena Élez, Raquel Comas‐Navarro, Frank Lincoln, Dirk Fey, Gift Nyamundanda, Aoife Nolan, Joern Lewin, Raquel Perez‐Lopez, Jonathan Briody, Kathleen Bennett, Walter Kolch, David Matallanas, Alexander Kel, Enrique Arenas, Joaquín Arribas, Bart Ghesquière, Josep Tabernero, Julie Meilleroux, Deborah McNamara, Ray McDermott, Marvin Lim, Mary O'Reilly, Brian Bird, Lisa Stack, Lucia Moloney, Patrick Morris, Keith Egan, Maciej Milewski, Lars Scheuer, Joachim Behringer, Georg Bolz, Ramon Salazar, Cristina Santos, Andrea Ruiz, Orla Casey, Verena Murphy, Matthias Ebert, Livio Trusolino, Diether Lambrechts, Anguraj Sadanandam, Catherine Sautès‐Fridman, Jochen Prehn, Paolo Nuciforo, Jacques Fieschi, Florence Monville, Darran O'Connor, Wolf Fridman, Annette Byrne   +61 more
wiley   +1 more source