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ssHiCstuff: a package for the design and analysis of ssDNA-specific Hi-C experiments. [PDF]

Bioinformatics
Mendiboure N, Modolo L, Janczarski S, Piazza A.   +3 more
europepmc   +1 more source

Restriction site mapping is in separation theory

Bioinformatics, 1988
A computer algorithm for restriction-site mapping consists of a generator of partial maps and a consistency checker. This paper examines consistency checking and argues that a method based on separation theory extracts the maximum amount of information from fragment lengths in digest data. It results in the minimum number of false maps being generated.
Lloyd Allison, Chut N. Yee
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Restriction map of Tn7

Plasmid, 1983
Tn7, a transposon of 14 kb, encodes resistance to trimethoprim (Tp) and streptomycin (Sm). A cleavage site map of this transposon for twenty-two different restriction enzymes as determined by comparison of restriction enzyme cleavage patterns of the plasmids ColE1 and ColE1::Tn7 is presented.
Gosti-Testu, Françoise, Norris, Victor, Brevet, Jean   +2 more
openaire   +3 more sources

An algorithm for searching restriction maps

Bioinformatics, 1990
This paper presents an algorithm that searches a DNA restriction enzyme map for regions that approximately match a shorter 'probe' map. Both the map and the probe consist of a sequence of address-enzyme pairs denoting restriction sites, and the algorithm penalizes a potential match for undetected or missing sites and for discrepancies in the distance ...
Webb Miller, James Ostell, Kenneth E. Rudd   +2 more
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Construction of restriction maps

Bioinformatics, 1988
A computer program is described, which constructs maps of restriction endonuclease cleavage sites in linear or circular DNA molecules, given the fragment lengths in single and double digestions with two enzymes. The algorithm is based upon a partition method and a very simple rule to chain fragments. The program is written in Prolog II.
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On the limitations of automated restriction mapping

Bioinformatics, 1994
Eight important restriction mapping programs, developed between 1978 and 1993, are analyzed and their performance evaluated. The analyses concentrate on the practical value of the programs to molecular biologists who do restriction mapping on a daily basis, rather than on theoretical efficiency.
James A. Inglehart, Peter C. Nelson
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A note on the restriction map for jacobi forms

Abhandlungen aus dem Mathematischen Seminar der Universität Hamburg, 1999
Let \(J_{k,m}(\Gamma_0(N),\chi)\) be the space of holomorphic Jacobi forms of weight \(k\), index \(m\), level \(N\) and character \(\chi\). Jacobi forms \(\phi(\tau,z)\in J_{k,m}(\Gamma_0(N),\chi)\) give rise to modular forms of weight \(k\) by restriction to \(z=0\), and more generally modular forms of weight \(k+\nu\) by certain differential ...
Arakawa, Tsuneo, Böcherer, Siegfried
openaire   +3 more sources