Results 21 to 30 of about 1,366,626 (365)
Nucleic Acids Research, 2012 16S ribosomal RNA gene (rDNA) amplicon analysis remains the standard approach for the cultivation-independent investigation of microbial diversity. The accuracy of these analyses depends strongly on the choice of primers.
A. Klindworth +6 more
semanticscholar +1 more source
The European ribosomal RNA database [PDF]
Nucleic Acids Research, 2004 The European ribosomal RNA database aims to compile all complete or nearly complete ribosomal RNA sequences from both the small (SSU) and large (LSU) ribosomal subunits. All sequences are available in aligned format. Sequence alignment is based on the secondary structure of the molecules, as determined by comparative sequence analysis.
Wuyts, Jan +2 more
openaire +5 more sources
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
Nucleic Acids Research, 2007 The publication of a complete genome sequence is usually accompanied by annotations of its genes. In contrast to protein coding genes, genes for ribosomal RNA (rRNA) are often poorly or inconsistently annotated.
K. Lagesen +5 more
semanticscholar +1 more source
Sri Lankan Journal of Infectious Diseases, 2014 Introduction: The complete mitochondrial (mt) genomes of nematodes sequenced thus far are circular and small in length, containing 37 genes, including 12–13 protein-coding genes: namely, cytochrome oxidase subunits 1–3 (cox1–3), nicotinamide adenine ...
S Wickramasinghe, L Yatawara, T Agatsuma
doaj +1 more source
Homoiterons and expansion in ribosomal RNAs [PDF]
FEBS Open Bio, 2015 Ribosomal RNAs in both prokaryotes and eukaryotes feature numerous repeats of three or more nucleotides with the same nucleobase (homoiterons). In prokaryotes these repeats are much more frequent in thermophile compared to mesophile or psychrophile species, and have similar frequency in both large RNAs.
Steven L. Parker +3 more
openaire +4 more sources
Nucleic Acids Research, 2007 Sequencing ribosomal RNA (rRNA) genes is currently the method of choice for phylogenetic reconstruction, nucleic acid based detection and quantification of microbial diversity. The ARB software suite with its corresponding rRNA datasets has been accepted
E. Pruesse +6 more
semanticscholar +1 more source
Massively parallel sequencing of human urinary exosome/microvesicle RNA reveals a predominance of non-coding RNA. [PDF]
PLoS ONE, 2014 Intact RNA from exosomes/microvesicles (collectively referred to as microvesicles) has sparked much interest as potential biomarkers for the non-invasive analysis of disease.
Kevin C Miranda +8 more
doaj +1 more source
Traffic of interacting ribosomes: effects of single-machine mechano-chemistry on protein synthesis [PDF]
Physical Review E 75, 021902 (2007), 2006 Many ribosomes simultaneously move on the same messenger RNA (mRNA), each separately synthesizing the protein coded by the mRNA. Earlier models of ribosome traffic represent each ribosome by a ``self-propelled particle'' and capture the dynamics by an extension of the totally asymmetric simple exclusion process (TASEP).
arxiv +2 more sources
RNA‐guided nucleotide modification of ribosomal and non‐ribosomal RNAs in Archaea [PDF]
Molecular Microbiology, 2004 SummaryArchaea use ribonucleoprotein (RNP) machines similar to those found in the eukaryotic nucleolus to methylate ribose residues in nascent ribosomal RNA. The archaeal complex required for this 2′‐O‐ribose‐methylation consists of the C/D box sRNA guide and three proteins, the core RNA‐binding aL7a protein, the aNop56 protein and the ...
Patrick P. Dennis +3 more
openaire +3 more sources
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
Bioinform., 2012 MOTIVATION In the analysis of homologous sequences, computation of multiple sequence alignments (MSAs) has become a bottleneck. This is especially troublesome for marker genes like the ribosomal RNA (rRNA) where already millions of sequences are publicly
E. Pruesse, J. Peplies, F. Glöckner
semanticscholar +1 more source