Results 221 to 230 of about 78,844 (296)

RNA-seq and Ribosome Profiling Reveal the Translational Landscape of Rice in Response to Rice Stripe Virus Infection. [PDF]

Viruses
Wang C, Tang Y, Zhou C, Li S, Chen J, Sun Z.   +5 more
europepmc   +1 more source

Comparative Analysis of Heat Exposure‐Induced Molecular Changes in Two Turtle Species with Contrasting Thermal Adaptations

Integrative Zoology, EarlyView.
Protein processing in the endoplasmic reticulum is highlighted in response to heat stress in Platysternon megacephalum. Under heat stress, the up‐regulation of genes such as CHOP in protein processing in the endoplasmic reticulum pathway, along with the suppression of energy and lipid metabolism and the up‐regulation of JARID2 expression, leads to ...
Jian Hong, Yangchun Gao, Jiaxuan Li, Yan Ge, Yufeng Wei, Youqiang Yin, Qianru Liang, Shiping Gong   +7 more
wiley   +1 more source

A revised genome annotation of the model cyanobacterium Synechocystis based on start and stop codon-enriched ribosome profiling and proteogenomics

Hess W, Krauspe V, Reimann V, Minges P, Bilger R, Gerstner M, Gelhausen R, Backofen R, Heiniger B, Jaques G, Ahrens C, Spät P, Macek B, Sharma C, Hadjeras L.   +14 more
europepmc   +1 more source

Refining the Vertebrate Mitochondrial 12S rRNA Secondary Structure by Comparative Analysis

Integrative Zoology, EarlyView.
This flowchart outlines the comprehensive workflow of the study, integrating diverse bioinformatics tools (e.g., NCBI2GO, SSU‐align, bpRNA) and their sequential interactions. Key steps, such as data preprocessing, structural prediction, and evolutionary analysis, are depicted with their respective outputs (e.g., standardized records, consensus ...
Fengxia Li, Gengyun Niu, Renzeng Du, Kun Wan, David Roy Smith, Meicai Wei, Haihe Shi   +6 more
wiley   +1 more source

Studies on ribosome-associated lncRNAs using ribosome profiling data

Studies on ribosome-associated lncRNAs using ribosome profiling data
学位の種別: 課程博士 審査委員会委員 : （主査）東京大学准教授 木立 尚孝, 東京大学教授 浅井 潔, 東京大学准教授 岩崎 渉, 東京大学客員准教授 岩崎 信太郎, 東京大学准教授 渋谷 哲朗, 早稲田大学教授 浜田 ...
openaire  

Ribosome profiling shows variable sensitivity to detect open reading frames for conventional and different types of cryptic T cell antigens. [PDF]

Mol Ther Methods Clin Dev
Fuchs KJ, Thomaidou S, van der Slik AR, van de Meent M, 't Hoen PAC, Falkenburg JHF, Zaldumbide A, Griffioen M.   +7 more
europepmc   +1 more source

Effects of applying Trichoderma asperellum to rice (Oryza sativa) on phytobiome and plant responses

Annals of Applied Biology, EarlyView.
We investigated the effect of dipping at transplanting or post‐transplanting spray application on the root‐associated microbiome or leaf epiphytes via amplicon sequencing, and on plant responses via RNA‐seq. Both root dipping and foliar application with Trichoderma asperellum spore suspension only had a limited impact on the leaf epiphytes and root ...
Greg Deakin, Georgina Fagg, Tom Passey, Louisa Robinson‐Boyer, Xiangming Xu   +4 more
wiley   +1 more source

Correction to: Unraveling the small proteome of the plant symbiont <i>Sinorhizobium meliloti</i> by ribosome profiling and proteogenomics. [PDF]

Microlife
europepmc   +1 more source

Author Correction: Unveiling conserved HIV-1 open reading frames encoding T cell antigens using ribosome profiling. [PDF]

Nat Commun
Bertrand L, Nelde A, Ramirez BC, Hatin I, Arbes H, François P, Demais S, Labaronne E, Decimo D, Guiguettaz L, Grégoire S, Bet A, Beauclair G, Gross A, Ziegler MC, Pereira M, Jeger-Madiot R, Verdier Y, Vinh J, Cardinaud S, Graff-Dubois S, Esclatine A, Gouttefangeas C, Altfeld M, Hocqueloux L, Samri A, Autran B, Lambotte O, Rammensee HG, Ricci EP, Walz J, Namy O, Moris A.   +32 more
europepmc   +1 more source

Single‐Cell Omics Analysis of Human Basophils Reveals Two Transcriptionally Distinct Populations

Allergy, EarlyView.
Integrated single‐cell transcriptomics and large‐scale immunophenotyping reveal the molecular landscape of human basophils. Circulating basophils comprise two transcriptionally distinct populations. A user‐friendly web resource enables interactive exploration of the generated data.
Sofia Papavasileiou, Jiezhen Mo, Daryl Boey, Chenyan Wu, Magnus Tronstad, Lucille Margerie, Remi‐André Olsen, Jörg A. Bachmann, Jing Hui Low, Jocelyn Ong, Lars Heede Blom, Anand Kumar Andiappan, Gunnar Nilsson, Joakim S. Dahlin   +13 more
wiley   +1 more source