Results 241 to 250 of about 511,984 (306)

bacNeo: A Computational Toolkit for Identifying Bacteria‐Derived Neoantigens in Human Cancers

iMetaMed, EarlyView.
We present bacterial neoantigen (bacNeo), a multi‐omics‐based computational software to classify bacterial components (BACC), type bacteria‐bound HLA alleles (BACH), and prioritize bacterial peptides as neoantigens (BACP). Bacterial neoantigen potential is quantified by score for peptide antigenicity recognition & kinetics (SPARK), enabling ...
Yunzhe Wang, Li Yuan, Katie W. Gu, Xiangdong Cheng, Bo Wen, Zhao Zhang   +5 more
wiley   +1 more source

Navigating Cetacean Mitochondrial Genome Data: Identifying Coverage and Deficiencies in Public Repositories. [PDF]

Mol Ecol Resour
Afonso L, Lagrotteria A, Lavrador AS, Suarez-Bregua P, Álvarez-González M, Valente R, Jensen MR, Saavedra C, Morais DK, Sousa-Pinto I, Pierce GJ, Magalhães C, Correia AM.   +12 more
europepmc   +1 more source

Substrate Characterization of Mycobacterial Kinase PknG Revealing PknG‐KARS‐MAPK Phosphorylation Signaling Axis in Host

iMetaMed, EarlyView.
This study employed multi‐omics approaches to investigate the regulatory mechanism of Mycobacterium PknG on host cell processes. We found that host lysine‐tRNA ligase (KARS) is a potential substrate of PknG; and PknG can regulate the immune response by catalyzing the phosphorylation of KARS at T592 and T595 sites, affecting the phosphorylation level in
Nana Tian, Shuyu Xie, Yanqing Tang, Junjie Liang, Wenhan Zhu, Tianqi Liu, Yewen Sun, Yang Yang, Luoxi Zhang, Danfeng Wang, Chuyao Lin, Jinyu Jia, Minjia Tan, Jun‐Yu Xu   +13 more
wiley   +1 more source

Structural evidence that RNA contributes to polymorphism of tau amyloid fibrils. [PDF]

iScience
Abskharon R, Jiang YX, Sawaya MR, Ge P, Zhang J, Boyer DR, Dolinsky JL, Pi J, Cascio D, Guo F, Eisenberg DS.   +10 more
europepmc   +1 more source

CGAS (Chloroplast Genome Analysis Suite): An automated python pipeline for comprehensive comparative chloroplast genomics

iMetaOmics, EarlyView.
Chloroplast Genome Analysis Suite (CGAS) is a comprehensive bioinformatics pipeline that streamline chloroplast genome analysis from raw sequencing reads to publication‐ready outputs. The suite integrates 14 specialized modules organized across three sequential phases.
Abdullah, Rushan Yan, Xiaoxuan Tian
wiley   +1 more source

Meniscal engraftment of iPSC-derived cartilage particles as hyaline and fibrous cartilage in a rabbit injury model. [PDF]

Regen Ther
Okimura K, Matsushita T, Nakanishi Y, Yamamoto T, Nishida K, Nagai K, Kanzaki N, Hoshino Y, Uehara K, Aoi T, Kuroda R.   +10 more
europepmc   +1 more source

RNA G-quadruplexes promote codon repeat-associated ribosomal frameshifting in human genes. [PDF]

Nucleic Acids Res
Li X, Li Z, Zhou Y, Gong S, Chen Z, Li J, Guo M, Gu X, Li F, Wei J, Zhong T, Yin T, Li T, Xing Y, Yang X, Xu L, Lai F, Dang Y, Ren G.   +18 more
europepmc   +1 more source

Maternal regulation of translation capacity across generations. [PDF]

PLoS Biol
Sarinay Cenik E.
europepmc   +1 more source

A curated database of rumen ciliate protozoal 18S rRNA gene sequences for metataxonomic applications. [PDF]

BMC Genom Data
Lawther K, Tapio I, Vera-Ponce de León A, Aho VTE, Huws SA, Dimonaco NJ.   +5 more
europepmc   +1 more source