Results 81 to 90 of about 345,547 (215)

Poly(A) inclusive RNA isoform sequencing (PAIso−seq) reveals wide-spread non-adenosine residues within RNA poly(A) tails

Nature Communications, 2019
The poly(A) tails on mRNA are vital for their function but it is difficult to map full-length sequences of mRNA isoforms with the entire poly(A) tails.
Yusheng Liu, Hu Nie, Hongxiang Liu, Falong Lu   +3 more
doaj   +1 more source

Procrustes is a machine-learning approach that removes cross-platform batch effects from clinical RNA sequencing data

Communications Biology
With the increased use of gene expression profiling for personalized oncology, optimized RNA sequencing (RNA-seq) protocols and algorithms are necessary to provide comparable expression measurements between exome capture (EC)-based and poly-A RNA-seq ...
Nikita Kotlov, Kirill Shaposhnikov, Cagdas Tazearslan, Madison Chasse, Artur Baisangurov, Svetlana Podsvirova, Dawn Fernandez, Mary Abdou, Leznath Kaneunyenye, Kelley Morgan, Ilya Cheremushkin, Pavel Zemskiy, Maxim Chelushkin, Maria Sorokina, Ekaterina Belova, Svetlana Khorkova, Yaroslav Lozinsky, Katerina Nuzhdina, Elena Vasileva, Dmitry Kravchenko, Kushal Suryamohan, Krystle Nomie, John Curran, Nathan Fowler, Alexander Bagaev   +24 more
doaj   +1 more source

NSMAP: A method for spliced isoforms identification and quantification from RNA-Seq [PDF]

, 2011
Zheng Xia, Jianguo Wen, Chung-Che Chang, Xiaobo Zhou   +3 more
openalex   +1 more source

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads [PDF]

, 2011
Ernest Turro, Shu-Yi Su, Ângela Gonçalves, Lachlan Coin, Sylvia Richardson, Alex Lewin   +5 more
openalex   +1 more source

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq [PDF]

, 2011
Saiful Islam, Una Kjällquist, Annalena Moliner, Paweł Zając, Jian-Bing Fan, Peter Lönnerberg, Sten Linnarsson   +6 more
openalex   +1 more source

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study [PDF]

, 2011
Qiongyi Zhao, Yi Wang, Yimeng Kong, Da Luo, Xuan Li, Pei Hao   +5 more
openalex   +1 more source

Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data [PDF]

, 2011
Jun Li, Robert Tibshirani
openalex   +1 more source

Computation for ChIP-seq and RNA-seq studies

, 2009
Shirley Pepke, B Wold, A Mortazavi
openalex   +2 more sources

ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets [PDF]

, 2011
Alyssa C. Frazee, Ben Langmead, Jeffrey T. Leek   +2 more
openalex   +1 more source

RNA-Seq Analysis of a Soybean Near-Isogenic Line Carrying Bacterial Leaf Pustule-Resistant and -Susceptible Alleles [PDF]

, 2011
Ki Hyun Kim, Yurim Kang, Dong Kim, Moongeun Yoon, Jung‐Kyung Moon, M. Y. Kim, Kyujung Van, Suk‐Ha Lee   +7 more
openalex   +1 more source